Gene : Lsat_1_v5_gn_5_61861 L. sativa V8
Defline:  (1 of 3) K01873 - valyl-tRNA synthetase (VARS, valS) Genomic Order:  1636
Name:  ? Lsat_1_v5_gn_5_61861 Secondary Identifier:  ? PAC:38964937
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa TRNA-CHARGING-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_61861 0.5kb upstream 0.5kb upstream 7121   true Lsat_1_v8_lg_5: 140560979-140568099 Lactuca sativa
Lsat_1_v5_gn_5_61861 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 140560979-140561478 Lactuca sativa
Lsat_1_v5_gn_5_61861 0.5kb downstream 0.5kb downstream 7121   true Lsat_1_v8_lg_5: 140561479-140568599 Lactuca sativa
Lsat_1_v5_gn_5_61861 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 140568100-140568599 Lactuca sativa
Lsat_1_v5_gn_5_61861 1.0kb upstream 1.0kb upstream 7621   true Lsat_1_v8_lg_5: 140560479-140568099 Lactuca sativa
Lsat_1_v5_gn_5_61861 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 140560479-140561478 Lactuca sativa
Lsat_1_v5_gn_5_61861 1.0kb downstream 1.0kb downstream 7621   true Lsat_1_v8_lg_5: 140561479-140569099 Lactuca sativa
Lsat_1_v5_gn_5_61861 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 140568100-140569099 Lactuca sativa
Lsat_1_v5_gn_5_61861 2.0kb upstream 2.0kb upstream 8621   true Lsat_1_v8_lg_5: 140559479-140568099 Lactuca sativa
Lsat_1_v5_gn_5_61861 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 140559479-140561478 Lactuca sativa
Lsat_1_v5_gn_5_61861 2.0kb downstream 2.0kb downstream 8621   true Lsat_1_v8_lg_5: 140561479-140570099 Lactuca sativa
Lsat_1_v5_gn_5_61861 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 140568100-140570099 Lactuca sativa
Lsat_1_v5_gn_5_61861 5.0kb upstream 5.0kb upstream 11621   true Lsat_1_v8_lg_5: 140556479-140568099 Lactuca sativa
Lsat_1_v5_gn_5_61861 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 140556479-140561478 Lactuca sativa
Lsat_1_v5_gn_5_61861 5.0kb downstream 5.0kb downstream 11621   true Lsat_1_v8_lg_5: 140561479-140573099 Lactuca sativa
Lsat_1_v5_gn_5_61861 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 140568100-140573099 Lactuca sativa
Lsat_1_v5_gn_5_61861 10.0kb upstream 10.0kb upstream 16621   true Lsat_1_v8_lg_5: 140551479-140568099 Lactuca sativa
Lsat_1_v5_gn_5_61861 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 140551479-140561478 Lactuca sativa
Lsat_1_v5_gn_5_61861 10.0kb downstream 10.0kb downstream 16621   true Lsat_1_v8_lg_5: 140561479-140578099 Lactuca sativa
Lsat_1_v5_gn_5_61861 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 140568100-140578099 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473719 5263 Asterids View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain