Gene : Lsat_1_v5_gn_6_30921 L. sativa V8
Defline:  (1 of 50) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  905
Name:  ? Lsat_1_v5_gn_6_30921 Secondary Identifier:  ? PAC:38940932
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_30921 0.5kb upstream 0.5kb upstream 2991   true Lsat_1_v8_lg_6: 39492967-39495957 Lactuca sativa
Lsat_1_v5_gn_6_30921 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 39492967-39493466 Lactuca sativa
Lsat_1_v5_gn_6_30921 0.5kb downstream 0.5kb downstream 2991   true Lsat_1_v8_lg_6: 39493467-39496457 Lactuca sativa
Lsat_1_v5_gn_6_30921 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 39495958-39496457 Lactuca sativa
Lsat_1_v5_gn_6_30921 1.0kb upstream 1.0kb upstream 3491   true Lsat_1_v8_lg_6: 39492467-39495957 Lactuca sativa
Lsat_1_v5_gn_6_30921 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 39492467-39493466 Lactuca sativa
Lsat_1_v5_gn_6_30921 1.0kb downstream 1.0kb downstream 3491   true Lsat_1_v8_lg_6: 39493467-39496957 Lactuca sativa
Lsat_1_v5_gn_6_30921 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 39495958-39496957 Lactuca sativa
Lsat_1_v5_gn_6_30921 2.0kb upstream 2.0kb upstream 4491   true Lsat_1_v8_lg_6: 39491467-39495957 Lactuca sativa
Lsat_1_v5_gn_6_30921 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 39491467-39493466 Lactuca sativa
Lsat_1_v5_gn_6_30921 2.0kb downstream 2.0kb downstream 4491   true Lsat_1_v8_lg_6: 39493467-39497957 Lactuca sativa
Lsat_1_v5_gn_6_30921 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 39495958-39497957 Lactuca sativa
Lsat_1_v5_gn_6_30921 5.0kb upstream 5.0kb upstream 7491   true Lsat_1_v8_lg_6: 39488467-39495957 Lactuca sativa
Lsat_1_v5_gn_6_30921 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 39488467-39493466 Lactuca sativa
Lsat_1_v5_gn_6_30921 5.0kb downstream 5.0kb downstream 7491   true Lsat_1_v8_lg_6: 39493467-39500957 Lactuca sativa
Lsat_1_v5_gn_6_30921 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 39495958-39500957 Lactuca sativa
Lsat_1_v5_gn_6_30921 10.0kb upstream 10.0kb upstream 12491   true Lsat_1_v8_lg_6: 39483467-39495957 Lactuca sativa
Lsat_1_v5_gn_6_30921 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 39483467-39493466 Lactuca sativa
Lsat_1_v5_gn_6_30921 10.0kb downstream 10.0kb downstream 12491   true Lsat_1_v8_lg_6: 39493467-39505957 Lactuca sativa
Lsat_1_v5_gn_6_30921 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 39495958-39505957 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474585 5263 Asterids View MSA
123740629 5271 Pentapetalae View MSA
122786381 5272 Eudicot View MSA
122046453 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310608 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain