Gene : Lsat_1_v5_gn_6_39361 L. sativa V8
Defline:  (1 of 11) K01184 - polygalacturonase (E3.2.1.15) Genomic Order:  1175
Name:  ? Lsat_1_v5_gn_6_39361 Secondary Identifier:  ? PAC:38937043
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-1081 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_39361 0.5kb upstream 0.5kb upstream 6403   true Lsat_1_v8_lg_6: 52607429-52613831 Lactuca sativa
Lsat_1_v5_gn_6_39361 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 52607429-52607928 Lactuca sativa
Lsat_1_v5_gn_6_39361 0.5kb downstream 0.5kb downstream 6403   true Lsat_1_v8_lg_6: 52607929-52614331 Lactuca sativa
Lsat_1_v5_gn_6_39361 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 52613832-52614331 Lactuca sativa
Lsat_1_v5_gn_6_39361 1.0kb upstream 1.0kb upstream 6903   true Lsat_1_v8_lg_6: 52606929-52613831 Lactuca sativa
Lsat_1_v5_gn_6_39361 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 52606929-52607928 Lactuca sativa
Lsat_1_v5_gn_6_39361 1.0kb downstream 1.0kb downstream 6903   true Lsat_1_v8_lg_6: 52607929-52614831 Lactuca sativa
Lsat_1_v5_gn_6_39361 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 52613832-52614831 Lactuca sativa
Lsat_1_v5_gn_6_39361 2.0kb upstream 2.0kb upstream 7903   true Lsat_1_v8_lg_6: 52605929-52613831 Lactuca sativa
Lsat_1_v5_gn_6_39361 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 52605929-52607928 Lactuca sativa
Lsat_1_v5_gn_6_39361 2.0kb downstream 2.0kb downstream 7903   true Lsat_1_v8_lg_6: 52607929-52615831 Lactuca sativa
Lsat_1_v5_gn_6_39361 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 52613832-52615831 Lactuca sativa
Lsat_1_v5_gn_6_39361 5.0kb upstream 5.0kb upstream 10903   true Lsat_1_v8_lg_6: 52602929-52613831 Lactuca sativa
Lsat_1_v5_gn_6_39361 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 52602929-52607928 Lactuca sativa
Lsat_1_v5_gn_6_39361 5.0kb downstream 5.0kb downstream 10903   true Lsat_1_v8_lg_6: 52607929-52618831 Lactuca sativa
Lsat_1_v5_gn_6_39361 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 52613832-52618831 Lactuca sativa
Lsat_1_v5_gn_6_39361 10.0kb upstream 10.0kb upstream 15903   true Lsat_1_v8_lg_6: 52597929-52613831 Lactuca sativa
Lsat_1_v5_gn_6_39361 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 52597929-52607928 Lactuca sativa
Lsat_1_v5_gn_6_39361 10.0kb downstream 10.0kb downstream 15903   true Lsat_1_v8_lg_6: 52607929-52623831 Lactuca sativa
Lsat_1_v5_gn_6_39361 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 52613832-52623831 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469641 5263 Asterids View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain