Gene : Lsat_1_v5_gn_6_43340 L. sativa V8
Defline:  (1 of 1) PTHR10003//PTHR10003:SF34 - SUPEROXIDE DISMUTASE CU-ZN -RELATED // SUPEROXIDE DISMUTASE [CU-ZN] 2, CHLOROPLASTIC Genomic Order:  1324
Name:  ? Lsat_1_v5_gn_6_43340 Secondary Identifier:  ? PAC:38940739
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa DETOX1-PWY Lactuca sativa pathologic  
Lsativa DETOX1-PWY-1 Lactuca sativa pathologic  
Lsativa PWY-6854 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_43340 0.5kb upstream 0.5kb upstream 3368   true Lsat_1_v8_lg_6: 58137848-58141215 Lactuca sativa
Lsat_1_v5_gn_6_43340 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 58140716-58141215 Lactuca sativa
Lsat_1_v5_gn_6_43340 0.5kb downstream 0.5kb downstream 3368   true Lsat_1_v8_lg_6: 58137348-58140715 Lactuca sativa
Lsat_1_v5_gn_6_43340 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 58137348-58137847 Lactuca sativa
Lsat_1_v5_gn_6_43340 1.0kb upstream 1.0kb upstream 3868   true Lsat_1_v8_lg_6: 58137848-58141715 Lactuca sativa
Lsat_1_v5_gn_6_43340 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 58140716-58141715 Lactuca sativa
Lsat_1_v5_gn_6_43340 1.0kb downstream 1.0kb downstream 3868   true Lsat_1_v8_lg_6: 58136848-58140715 Lactuca sativa
Lsat_1_v5_gn_6_43340 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 58136848-58137847 Lactuca sativa
Lsat_1_v5_gn_6_43340 2.0kb upstream 2.0kb upstream 4868   true Lsat_1_v8_lg_6: 58137848-58142715 Lactuca sativa
Lsat_1_v5_gn_6_43340 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 58140716-58142715 Lactuca sativa
Lsat_1_v5_gn_6_43340 2.0kb downstream 2.0kb downstream 4868   true Lsat_1_v8_lg_6: 58135848-58140715 Lactuca sativa
Lsat_1_v5_gn_6_43340 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 58135848-58137847 Lactuca sativa
Lsat_1_v5_gn_6_43340 5.0kb upstream 5.0kb upstream 7868   true Lsat_1_v8_lg_6: 58137848-58145715 Lactuca sativa
Lsat_1_v5_gn_6_43340 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 58140716-58145715 Lactuca sativa
Lsat_1_v5_gn_6_43340 5.0kb downstream 5.0kb downstream 7868   true Lsat_1_v8_lg_6: 58132848-58140715 Lactuca sativa
Lsat_1_v5_gn_6_43340 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 58132848-58137847 Lactuca sativa
Lsat_1_v5_gn_6_43340 10.0kb upstream 10.0kb upstream 12868   true Lsat_1_v8_lg_6: 58137848-58150715 Lactuca sativa
Lsat_1_v5_gn_6_43340 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 58140716-58150715 Lactuca sativa
Lsat_1_v5_gn_6_43340 10.0kb downstream 10.0kb downstream 12868   true Lsat_1_v8_lg_6: 58127848-58140715 Lactuca sativa
Lsat_1_v5_gn_6_43340 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 58127848-58137847 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467710 5263 Asterids View MSA
123737273 5271 Pentapetalae View MSA
122788875 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain