Gene : Lsat_1_v5_gn_6_92521 L. sativa V8
Defline:  (1 of 2) K01704 - 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit (leuD) Genomic Order:  2673
Name:  ? Lsat_1_v5_gn_6_92521 Secondary Identifier:  ? PAC:38936555
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa BRANCHED-CHAIN-AA-SYN-PWY Lactuca sativa pathologic  
Lsativa LEUSYN-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_92521 0.5kb upstream 0.5kb upstream 1936   true Lsat_1_v8_lg_6: 152864740-152866675 Lactuca sativa
Lsat_1_v5_gn_6_92521 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 152864740-152865239 Lactuca sativa
Lsat_1_v5_gn_6_92521 0.5kb downstream 0.5kb downstream 1936   true Lsat_1_v8_lg_6: 152865240-152867175 Lactuca sativa
Lsat_1_v5_gn_6_92521 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 152866676-152867175 Lactuca sativa
Lsat_1_v5_gn_6_92521 1.0kb upstream 1.0kb upstream 2436   true Lsat_1_v8_lg_6: 152864240-152866675 Lactuca sativa
Lsat_1_v5_gn_6_92521 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 152864240-152865239 Lactuca sativa
Lsat_1_v5_gn_6_92521 1.0kb downstream 1.0kb downstream 2436   true Lsat_1_v8_lg_6: 152865240-152867675 Lactuca sativa
Lsat_1_v5_gn_6_92521 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 152866676-152867675 Lactuca sativa
Lsat_1_v5_gn_6_92521 2.0kb upstream 2.0kb upstream 3436   true Lsat_1_v8_lg_6: 152863240-152866675 Lactuca sativa
Lsat_1_v5_gn_6_92521 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 152863240-152865239 Lactuca sativa
Lsat_1_v5_gn_6_92521 2.0kb downstream 2.0kb downstream 3436   true Lsat_1_v8_lg_6: 152865240-152868675 Lactuca sativa
Lsat_1_v5_gn_6_92521 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 152866676-152868675 Lactuca sativa
Lsat_1_v5_gn_6_92521 5.0kb upstream 5.0kb upstream 6436   true Lsat_1_v8_lg_6: 152860240-152866675 Lactuca sativa
Lsat_1_v5_gn_6_92521 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 152860240-152865239 Lactuca sativa
Lsat_1_v5_gn_6_92521 5.0kb downstream 5.0kb downstream 6436   true Lsat_1_v8_lg_6: 152865240-152871675 Lactuca sativa
Lsat_1_v5_gn_6_92521 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 152866676-152871675 Lactuca sativa
Lsat_1_v5_gn_6_92521 10.0kb upstream 10.0kb upstream 11436   true Lsat_1_v8_lg_6: 152855240-152866675 Lactuca sativa
Lsat_1_v5_gn_6_92521 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 152855240-152865239 Lactuca sativa
Lsat_1_v5_gn_6_92521 10.0kb downstream 10.0kb downstream 11436   true Lsat_1_v8_lg_6: 152865240-152876675 Lactuca sativa
Lsat_1_v5_gn_6_92521 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 152866676-152876675 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040980 5273 Angiosperm View MSA
121475512 5263 Asterids View MSA
123736502 5271 Pentapetalae View MSA
122789957 5272 Eudicot View MSA
121345878 5274 Embryophyte View MSA
123423763 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain