Gene : Lsat_1_v5_gn_6_68800 L. sativa V8
Defline:  (1 of 1) KOG0106//KOG0131//KOG4205 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 Genomic Order:  1960
Name:  ? Lsat_1_v5_gn_6_68800 Secondary Identifier:  ? PAC:38940258
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_68800 0.5kb upstream 0.5kb upstream 4170   true Lsat_1_v8_lg_6: 103250430-103254599 Lactuca sativa
Lsat_1_v5_gn_6_68800 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 103254100-103254599 Lactuca sativa
Lsat_1_v5_gn_6_68800 0.5kb downstream 0.5kb downstream 4170   true Lsat_1_v8_lg_6: 103249930-103254099 Lactuca sativa
Lsat_1_v5_gn_6_68800 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 103249930-103250429 Lactuca sativa
Lsat_1_v5_gn_6_68800 1.0kb upstream 1.0kb upstream 4670   true Lsat_1_v8_lg_6: 103250430-103255099 Lactuca sativa
Lsat_1_v5_gn_6_68800 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 103254100-103255099 Lactuca sativa
Lsat_1_v5_gn_6_68800 1.0kb downstream 1.0kb downstream 4670   true Lsat_1_v8_lg_6: 103249430-103254099 Lactuca sativa
Lsat_1_v5_gn_6_68800 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 103249430-103250429 Lactuca sativa
Lsat_1_v5_gn_6_68800 2.0kb upstream 2.0kb upstream 5670   true Lsat_1_v8_lg_6: 103250430-103256099 Lactuca sativa
Lsat_1_v5_gn_6_68800 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 103254100-103256099 Lactuca sativa
Lsat_1_v5_gn_6_68800 2.0kb downstream 2.0kb downstream 5670   true Lsat_1_v8_lg_6: 103248430-103254099 Lactuca sativa
Lsat_1_v5_gn_6_68800 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 103248430-103250429 Lactuca sativa
Lsat_1_v5_gn_6_68800 5.0kb upstream 5.0kb upstream 8670   true Lsat_1_v8_lg_6: 103250430-103259099 Lactuca sativa
Lsat_1_v5_gn_6_68800 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 103254100-103259099 Lactuca sativa
Lsat_1_v5_gn_6_68800 5.0kb downstream 5.0kb downstream 8670   true Lsat_1_v8_lg_6: 103245430-103254099 Lactuca sativa
Lsat_1_v5_gn_6_68800 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 103245430-103250429 Lactuca sativa
Lsat_1_v5_gn_6_68800 10.0kb upstream 10.0kb upstream 13670   true Lsat_1_v8_lg_6: 103250430-103264099 Lactuca sativa
Lsat_1_v5_gn_6_68800 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 103254100-103264099 Lactuca sativa
Lsat_1_v5_gn_6_68800 10.0kb downstream 10.0kb downstream 13670   true Lsat_1_v8_lg_6: 103240430-103254099 Lactuca sativa
Lsat_1_v5_gn_6_68800 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 103240430-103250429 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473277 5263 Asterids View MSA
123739967 5271 Pentapetalae View MSA
122796088 5272 Eudicot View MSA
122043625 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349165 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain