Gene : Lsat_1_v5_gn_6_69540 L. sativa V8
Defline:  (1 of 2) K15322 - tRNA-splicing endonuclease subunit Sen2 (TSEN2) Genomic Order:  2054
Name:  ? Lsat_1_v5_gn_6_69540 Secondary Identifier:  ? PAC:38939383
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6689 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_69540 0.5kb upstream 0.5kb upstream 1977   true Lsat_1_v8_lg_6: 116408226-116410202 Lactuca sativa
Lsat_1_v5_gn_6_69540 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 116409703-116410202 Lactuca sativa
Lsat_1_v5_gn_6_69540 0.5kb downstream 0.5kb downstream 1977   true Lsat_1_v8_lg_6: 116407726-116409702 Lactuca sativa
Lsat_1_v5_gn_6_69540 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 116407726-116408225 Lactuca sativa
Lsat_1_v5_gn_6_69540 1.0kb upstream 1.0kb upstream 2477   true Lsat_1_v8_lg_6: 116408226-116410702 Lactuca sativa
Lsat_1_v5_gn_6_69540 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 116409703-116410702 Lactuca sativa
Lsat_1_v5_gn_6_69540 1.0kb downstream 1.0kb downstream 2477   true Lsat_1_v8_lg_6: 116407226-116409702 Lactuca sativa
Lsat_1_v5_gn_6_69540 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 116407226-116408225 Lactuca sativa
Lsat_1_v5_gn_6_69540 2.0kb upstream 2.0kb upstream 3477   true Lsat_1_v8_lg_6: 116408226-116411702 Lactuca sativa
Lsat_1_v5_gn_6_69540 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 116409703-116411702 Lactuca sativa
Lsat_1_v5_gn_6_69540 2.0kb downstream 2.0kb downstream 3477   true Lsat_1_v8_lg_6: 116406226-116409702 Lactuca sativa
Lsat_1_v5_gn_6_69540 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 116406226-116408225 Lactuca sativa
Lsat_1_v5_gn_6_69540 5.0kb upstream 5.0kb upstream 6477   true Lsat_1_v8_lg_6: 116408226-116414702 Lactuca sativa
Lsat_1_v5_gn_6_69540 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 116409703-116414702 Lactuca sativa
Lsat_1_v5_gn_6_69540 5.0kb downstream 5.0kb downstream 6477   true Lsat_1_v8_lg_6: 116403226-116409702 Lactuca sativa
Lsat_1_v5_gn_6_69540 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 116403226-116408225 Lactuca sativa
Lsat_1_v5_gn_6_69540 10.0kb upstream 10.0kb upstream 11477   true Lsat_1_v8_lg_6: 116408226-116419702 Lactuca sativa
Lsat_1_v5_gn_6_69540 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 116409703-116419702 Lactuca sativa
Lsat_1_v5_gn_6_69540 10.0kb downstream 10.0kb downstream 11477   true Lsat_1_v8_lg_6: 116398226-116409702 Lactuca sativa
Lsat_1_v5_gn_6_69540 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 116398226-116408225 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
121474404 5263 Asterids View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain