Gene : Lsat_1_v5_gn_6_81220 L. sativa V8
Defline:  (1 of 3) PTHR10694:SF33 - TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN Genomic Order:  2336
Name:  ? Lsat_1_v5_gn_6_81220 Secondary Identifier:  ? PAC:38936605
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_81220 0.5kb upstream 0.5kb upstream 4848   true Lsat_1_v8_lg_6: 132659620-132664467 Lactuca sativa
Lsat_1_v5_gn_6_81220 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 132663968-132664467 Lactuca sativa
Lsat_1_v5_gn_6_81220 0.5kb downstream 0.5kb downstream 4848   true Lsat_1_v8_lg_6: 132659120-132663967 Lactuca sativa
Lsat_1_v5_gn_6_81220 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 132659120-132659619 Lactuca sativa
Lsat_1_v5_gn_6_81220 1.0kb upstream 1.0kb upstream 5348   true Lsat_1_v8_lg_6: 132659620-132664967 Lactuca sativa
Lsat_1_v5_gn_6_81220 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 132663968-132664967 Lactuca sativa
Lsat_1_v5_gn_6_81220 1.0kb downstream 1.0kb downstream 5348   true Lsat_1_v8_lg_6: 132658620-132663967 Lactuca sativa
Lsat_1_v5_gn_6_81220 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 132658620-132659619 Lactuca sativa
Lsat_1_v5_gn_6_81220 2.0kb upstream 2.0kb upstream 6348   true Lsat_1_v8_lg_6: 132659620-132665967 Lactuca sativa
Lsat_1_v5_gn_6_81220 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 132663968-132665967 Lactuca sativa
Lsat_1_v5_gn_6_81220 2.0kb downstream 2.0kb downstream 6348   true Lsat_1_v8_lg_6: 132657620-132663967 Lactuca sativa
Lsat_1_v5_gn_6_81220 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 132657620-132659619 Lactuca sativa
Lsat_1_v5_gn_6_81220 5.0kb upstream 5.0kb upstream 9348   true Lsat_1_v8_lg_6: 132659620-132668967 Lactuca sativa
Lsat_1_v5_gn_6_81220 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 132663968-132668967 Lactuca sativa
Lsat_1_v5_gn_6_81220 5.0kb downstream 5.0kb downstream 9348   true Lsat_1_v8_lg_6: 132654620-132663967 Lactuca sativa
Lsat_1_v5_gn_6_81220 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 132654620-132659619 Lactuca sativa
Lsat_1_v5_gn_6_81220 10.0kb upstream 10.0kb upstream 14348   true Lsat_1_v8_lg_6: 132659620-132673967 Lactuca sativa
Lsat_1_v5_gn_6_81220 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 132663968-132673967 Lactuca sativa
Lsat_1_v5_gn_6_81220 10.0kb downstream 10.0kb downstream 14348   true Lsat_1_v8_lg_6: 132649620-132663967 Lactuca sativa
Lsat_1_v5_gn_6_81220 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 132649620-132659619 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477111 5263 Asterids View MSA
123753636 5271 Pentapetalae View MSA
122788405 5272 Eudicot View MSA
122042889 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121310039 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain