Gene : Lsat_1_v5_gn_7_108581 L. sativa V8
Defline:  (1 of 1) PTHR11777//PTHR11777:SF18 - ALANYL-TRNA SYNTHETASE // ALANINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  3278
Name:  ? Lsat_1_v5_gn_7_108581 Secondary Identifier:  ? PAC:38913757
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa TRNA-CHARGING-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_7_108581 0.5kb upstream 0.5kb upstream 7794   true Lsat_1_v8_lg_7: 183914621-183922414 Lactuca sativa
Lsat_1_v5_gn_7_108581 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_7: 183914621-183915120 Lactuca sativa
Lsat_1_v5_gn_7_108581 0.5kb downstream 0.5kb downstream 7794   true Lsat_1_v8_lg_7: 183915121-183922914 Lactuca sativa
Lsat_1_v5_gn_7_108581 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_7: 183922415-183922914 Lactuca sativa
Lsat_1_v5_gn_7_108581 1.0kb upstream 1.0kb upstream 8294   true Lsat_1_v8_lg_7: 183914121-183922414 Lactuca sativa
Lsat_1_v5_gn_7_108581 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_7: 183914121-183915120 Lactuca sativa
Lsat_1_v5_gn_7_108581 1.0kb downstream 1.0kb downstream 8294   true Lsat_1_v8_lg_7: 183915121-183923414 Lactuca sativa
Lsat_1_v5_gn_7_108581 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_7: 183922415-183923414 Lactuca sativa
Lsat_1_v5_gn_7_108581 2.0kb upstream 2.0kb upstream 9294   true Lsat_1_v8_lg_7: 183913121-183922414 Lactuca sativa
Lsat_1_v5_gn_7_108581 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_7: 183913121-183915120 Lactuca sativa
Lsat_1_v5_gn_7_108581 2.0kb downstream 2.0kb downstream 9294   true Lsat_1_v8_lg_7: 183915121-183924414 Lactuca sativa
Lsat_1_v5_gn_7_108581 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_7: 183922415-183924414 Lactuca sativa
Lsat_1_v5_gn_7_108581 5.0kb upstream 5.0kb upstream 12294   true Lsat_1_v8_lg_7: 183910121-183922414 Lactuca sativa
Lsat_1_v5_gn_7_108581 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_7: 183910121-183915120 Lactuca sativa
Lsat_1_v5_gn_7_108581 5.0kb downstream 5.0kb downstream 12294   true Lsat_1_v8_lg_7: 183915121-183927414 Lactuca sativa
Lsat_1_v5_gn_7_108581 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_7: 183922415-183927414 Lactuca sativa
Lsat_1_v5_gn_7_108581 10.0kb upstream 10.0kb upstream 17294   true Lsat_1_v8_lg_7: 183905121-183922414 Lactuca sativa
Lsat_1_v5_gn_7_108581 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_7: 183905121-183915120 Lactuca sativa
Lsat_1_v5_gn_7_108581 10.0kb downstream 10.0kb downstream 17294   true Lsat_1_v8_lg_7: 183915121-183932414 Lactuca sativa
Lsat_1_v5_gn_7_108581 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_7: 183922415-183932414 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473791 5263 Asterids View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain