Gene : Lsat_1_v5_gn_7_78961 L. sativa V8
Defline:  (1 of 2) PTHR11680:SF7 - SERINE HYDROXYMETHYLTRANSFERASE 6-RELATED Genomic Order:  2299
Name:  ? Lsat_1_v5_gn_7_78961 Secondary Identifier:  ? PAC:38914834
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa GLYSYN-PWY Lactuca sativa pathologic  
Lsativa PWY-2161 Lactuca sativa pathologic  
Lsativa PWY-3841 Lactuca sativa pathologic  
Lsativa SER-GLYSYN-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_7_78961 0.5kb upstream 0.5kb upstream 3954   true Lsat_1_v8_lg_7: 128860635-128864588 Lactuca sativa
Lsat_1_v5_gn_7_78961 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_7: 128860635-128861134 Lactuca sativa
Lsat_1_v5_gn_7_78961 0.5kb downstream 0.5kb downstream 3954   true Lsat_1_v8_lg_7: 128861135-128865088 Lactuca sativa
Lsat_1_v5_gn_7_78961 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_7: 128864589-128865088 Lactuca sativa
Lsat_1_v5_gn_7_78961 1.0kb upstream 1.0kb upstream 4454   true Lsat_1_v8_lg_7: 128860135-128864588 Lactuca sativa
Lsat_1_v5_gn_7_78961 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_7: 128860135-128861134 Lactuca sativa
Lsat_1_v5_gn_7_78961 1.0kb downstream 1.0kb downstream 4454   true Lsat_1_v8_lg_7: 128861135-128865588 Lactuca sativa
Lsat_1_v5_gn_7_78961 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_7: 128864589-128865588 Lactuca sativa
Lsat_1_v5_gn_7_78961 2.0kb upstream 2.0kb upstream 5454   true Lsat_1_v8_lg_7: 128859135-128864588 Lactuca sativa
Lsat_1_v5_gn_7_78961 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_7: 128859135-128861134 Lactuca sativa
Lsat_1_v5_gn_7_78961 2.0kb downstream 2.0kb downstream 5454   true Lsat_1_v8_lg_7: 128861135-128866588 Lactuca sativa
Lsat_1_v5_gn_7_78961 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_7: 128864589-128866588 Lactuca sativa
Lsat_1_v5_gn_7_78961 5.0kb upstream 5.0kb upstream 8454   true Lsat_1_v8_lg_7: 128856135-128864588 Lactuca sativa
Lsat_1_v5_gn_7_78961 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_7: 128856135-128861134 Lactuca sativa
Lsat_1_v5_gn_7_78961 5.0kb downstream 5.0kb downstream 8454   true Lsat_1_v8_lg_7: 128861135-128869588 Lactuca sativa
Lsat_1_v5_gn_7_78961 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_7: 128864589-128869588 Lactuca sativa
Lsat_1_v5_gn_7_78961 10.0kb upstream 10.0kb upstream 13454   true Lsat_1_v8_lg_7: 128851135-128864588 Lactuca sativa
Lsat_1_v5_gn_7_78961 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_7: 128851135-128861134 Lactuca sativa
Lsat_1_v5_gn_7_78961 10.0kb downstream 10.0kb downstream 13454   true Lsat_1_v8_lg_7: 128861135-128874588 Lactuca sativa
Lsat_1_v5_gn_7_78961 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_7: 128864589-128874588 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469721 5263 Asterids View MSA
123741866 5271 Pentapetalae View MSA
122787051 5272 Eudicot View MSA
122046261 5273 Angiosperm View MSA
121345900 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain