Gene : Lsat_1_v5_gn_8_26220 L. sativa V8
Defline:  (1 of 1) PTHR10357//PTHR10357:SF110 - ALPHA-AMYLASE // PROTEIN T04A8.7, ISOFORM A Genomic Order:  888
Name:  ? Lsat_1_v5_gn_8_26220 Secondary Identifier:  ? PAC:38951508
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa GLYCOGENSYNTH-PWY Lactuca sativa pathologic  
Lsativa PWY-622 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_26220 0.5kb upstream 0.5kb upstream 5776   true Lsat_1_v8_lg_8: 33012971-33018746 Lactuca sativa
Lsat_1_v5_gn_8_26220 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 33012971-33013470 Lactuca sativa
Lsat_1_v5_gn_8_26220 0.5kb downstream 0.5kb downstream 5776   true Lsat_1_v8_lg_8: 33013471-33019246 Lactuca sativa
Lsat_1_v5_gn_8_26220 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 33018747-33019246 Lactuca sativa
Lsat_1_v5_gn_8_26220 1.0kb upstream 1.0kb upstream 6276   true Lsat_1_v8_lg_8: 33012471-33018746 Lactuca sativa
Lsat_1_v5_gn_8_26220 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 33012471-33013470 Lactuca sativa
Lsat_1_v5_gn_8_26220 1.0kb downstream 1.0kb downstream 6276   true Lsat_1_v8_lg_8: 33013471-33019746 Lactuca sativa
Lsat_1_v5_gn_8_26220 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 33018747-33019746 Lactuca sativa
Lsat_1_v5_gn_8_26220 2.0kb upstream 2.0kb upstream 7276   true Lsat_1_v8_lg_8: 33011471-33018746 Lactuca sativa
Lsat_1_v5_gn_8_26220 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 33011471-33013470 Lactuca sativa
Lsat_1_v5_gn_8_26220 2.0kb downstream 2.0kb downstream 7276   true Lsat_1_v8_lg_8: 33013471-33020746 Lactuca sativa
Lsat_1_v5_gn_8_26220 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 33018747-33020746 Lactuca sativa
Lsat_1_v5_gn_8_26220 5.0kb upstream 5.0kb upstream 10276   true Lsat_1_v8_lg_8: 33008471-33018746 Lactuca sativa
Lsat_1_v5_gn_8_26220 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 33008471-33013470 Lactuca sativa
Lsat_1_v5_gn_8_26220 5.0kb downstream 5.0kb downstream 10276   true Lsat_1_v8_lg_8: 33013471-33023746 Lactuca sativa
Lsat_1_v5_gn_8_26220 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 33018747-33023746 Lactuca sativa
Lsat_1_v5_gn_8_26220 10.0kb upstream 10.0kb upstream 15276   true Lsat_1_v8_lg_8: 33003471-33018746 Lactuca sativa
Lsat_1_v5_gn_8_26220 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 33003471-33013470 Lactuca sativa
Lsat_1_v5_gn_8_26220 10.0kb downstream 10.0kb downstream 15276   true Lsat_1_v8_lg_8: 33013471-33028746 Lactuca sativa
Lsat_1_v5_gn_8_26220 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 33018747-33028746 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474956 5263 Asterids View MSA
123742609 5271 Pentapetalae View MSA
122794740 5272 Eudicot View MSA
122048123 5273 Angiosperm View MSA
121348370 5274 Embryophyte View MSA
123425739 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain