Gene : Lsat_1_v5_gn_8_29040 L. sativa V8
Defline:  (1 of 1) 3.2.1.1//5.3.1.1 - Alpha-amylase / Glycogenase // Triose-phosphate isomerase / Triosephosphate mutase Genomic Order:  962
Name:  ? Lsat_1_v5_gn_8_29040 Secondary Identifier:  ? PAC:38949833
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa ANAEROFRUCAT-PWY Lactuca sativa pathologic  
Lsativa ANAGLYCOLYSIS-PWY Lactuca sativa pathologic  
Lsativa CALVIN-PWY Lactuca sativa pathologic  
Lsativa GLUCONEO-PWY Lactuca sativa pathologic  
Lsativa PHOTOALL-PWY Lactuca sativa pathologic  
Lsativa PWY-1042 Lactuca sativa pathologic  
Lsativa PWY-5464 Lactuca sativa pathologic  
Lsativa PWY66-373 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_29040 0.5kb upstream 0.5kb upstream 9580   true Lsat_1_v8_lg_8: 35933016-35942595 Lactuca sativa
Lsat_1_v5_gn_8_29040 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 35942096-35942595 Lactuca sativa
Lsat_1_v5_gn_8_29040 0.5kb downstream 0.5kb downstream 9580   true Lsat_1_v8_lg_8: 35932516-35942095 Lactuca sativa
Lsat_1_v5_gn_8_29040 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 35932516-35933015 Lactuca sativa
Lsat_1_v5_gn_8_29040 1.0kb upstream 1.0kb upstream 10080   true Lsat_1_v8_lg_8: 35933016-35943095 Lactuca sativa
Lsat_1_v5_gn_8_29040 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 35942096-35943095 Lactuca sativa
Lsat_1_v5_gn_8_29040 1.0kb downstream 1.0kb downstream 10080   true Lsat_1_v8_lg_8: 35932016-35942095 Lactuca sativa
Lsat_1_v5_gn_8_29040 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 35932016-35933015 Lactuca sativa
Lsat_1_v5_gn_8_29040 2.0kb upstream 2.0kb upstream 11080   true Lsat_1_v8_lg_8: 35933016-35944095 Lactuca sativa
Lsat_1_v5_gn_8_29040 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 35942096-35944095 Lactuca sativa
Lsat_1_v5_gn_8_29040 2.0kb downstream 2.0kb downstream 11080   true Lsat_1_v8_lg_8: 35931016-35942095 Lactuca sativa
Lsat_1_v5_gn_8_29040 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 35931016-35933015 Lactuca sativa
Lsat_1_v5_gn_8_29040 5.0kb upstream 5.0kb upstream 14080   true Lsat_1_v8_lg_8: 35933016-35947095 Lactuca sativa
Lsat_1_v5_gn_8_29040 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 35942096-35947095 Lactuca sativa
Lsat_1_v5_gn_8_29040 5.0kb downstream 5.0kb downstream 14080   true Lsat_1_v8_lg_8: 35928016-35942095 Lactuca sativa
Lsat_1_v5_gn_8_29040 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 35928016-35933015 Lactuca sativa
Lsat_1_v5_gn_8_29040 10.0kb upstream 10.0kb upstream 19080   true Lsat_1_v8_lg_8: 35933016-35952095 Lactuca sativa
Lsat_1_v5_gn_8_29040 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 35942096-35952095 Lactuca sativa
Lsat_1_v5_gn_8_29040 10.0kb downstream 10.0kb downstream 19080   true Lsat_1_v8_lg_8: 35923016-35942095 Lactuca sativa
Lsat_1_v5_gn_8_29040 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 35923016-35933015 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121447936 5263 Asterids Singleton cluster - no MSA
123751733 5271 Pentapetalae View MSA
122785800 5272 Eudicot View MSA
122050125 5273 Angiosperm View MSA
121348688 5274 Embryophyte View MSA
123427521 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain