Gene : Lsat_1_v5_gn_8_31881 L. sativa V8
Defline:  (1 of 1) PTHR11739:SF4 - CITRATE SYNTHASE, PEROXISOMAL Genomic Order:  1060
Name:  ? Lsat_1_v5_gn_8_31881 Secondary Identifier:  ? PAC:38952276
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa GLYOXYLATE-BYPASS Lactuca sativa pathologic  
Lsativa PWY-5464 Lactuca sativa pathologic  
Lsativa PWY-561 Lactuca sativa pathologic  
Lsativa PWY-5690 Lactuca sativa pathologic  
Lsativa PWY-6549 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_31881 0.5kb upstream 0.5kb upstream 4765   true Lsat_1_v8_lg_8: 40826109-40830873 Lactuca sativa
Lsat_1_v5_gn_8_31881 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 40826109-40826608 Lactuca sativa
Lsat_1_v5_gn_8_31881 0.5kb downstream 0.5kb downstream 4765   true Lsat_1_v8_lg_8: 40826609-40831373 Lactuca sativa
Lsat_1_v5_gn_8_31881 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 40830874-40831373 Lactuca sativa
Lsat_1_v5_gn_8_31881 1.0kb upstream 1.0kb upstream 5265   true Lsat_1_v8_lg_8: 40825609-40830873 Lactuca sativa
Lsat_1_v5_gn_8_31881 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 40825609-40826608 Lactuca sativa
Lsat_1_v5_gn_8_31881 1.0kb downstream 1.0kb downstream 5265   true Lsat_1_v8_lg_8: 40826609-40831873 Lactuca sativa
Lsat_1_v5_gn_8_31881 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 40830874-40831873 Lactuca sativa
Lsat_1_v5_gn_8_31881 2.0kb upstream 2.0kb upstream 6265   true Lsat_1_v8_lg_8: 40824609-40830873 Lactuca sativa
Lsat_1_v5_gn_8_31881 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 40824609-40826608 Lactuca sativa
Lsat_1_v5_gn_8_31881 2.0kb downstream 2.0kb downstream 6265   true Lsat_1_v8_lg_8: 40826609-40832873 Lactuca sativa
Lsat_1_v5_gn_8_31881 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 40830874-40832873 Lactuca sativa
Lsat_1_v5_gn_8_31881 5.0kb upstream 5.0kb upstream 9265   true Lsat_1_v8_lg_8: 40821609-40830873 Lactuca sativa
Lsat_1_v5_gn_8_31881 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 40821609-40826608 Lactuca sativa
Lsat_1_v5_gn_8_31881 5.0kb downstream 5.0kb downstream 9265   true Lsat_1_v8_lg_8: 40826609-40835873 Lactuca sativa
Lsat_1_v5_gn_8_31881 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 40830874-40835873 Lactuca sativa
Lsat_1_v5_gn_8_31881 10.0kb upstream 10.0kb upstream 14265   true Lsat_1_v8_lg_8: 40816609-40830873 Lactuca sativa
Lsat_1_v5_gn_8_31881 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 40816609-40826608 Lactuca sativa
Lsat_1_v5_gn_8_31881 10.0kb downstream 10.0kb downstream 14265   true Lsat_1_v8_lg_8: 40826609-40840873 Lactuca sativa
Lsat_1_v5_gn_8_31881 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 40830874-40840873 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121475447 5263 Asterids View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain