Gene : Lsat_1_v5_gn_8_74960 L. sativa V8
Defline:  (1 of 1) PTHR23083//PTHR23083:SF397 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED Genomic Order:  2318
Name:  ? Lsat_1_v5_gn_8_74960 Secondary Identifier:  ? PAC:38954444
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7437 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_74960 0.5kb upstream 0.5kb upstream 6603   true Lsat_1_v8_lg_8: 109472497-109479099 Lactuca sativa
Lsat_1_v5_gn_8_74960 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 109478600-109479099 Lactuca sativa
Lsat_1_v5_gn_8_74960 0.5kb downstream 0.5kb downstream 6603   true Lsat_1_v8_lg_8: 109471997-109478599 Lactuca sativa
Lsat_1_v5_gn_8_74960 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 109471997-109472496 Lactuca sativa
Lsat_1_v5_gn_8_74960 1.0kb upstream 1.0kb upstream 7103   true Lsat_1_v8_lg_8: 109472497-109479599 Lactuca sativa
Lsat_1_v5_gn_8_74960 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 109478600-109479599 Lactuca sativa
Lsat_1_v5_gn_8_74960 1.0kb downstream 1.0kb downstream 7103   true Lsat_1_v8_lg_8: 109471497-109478599 Lactuca sativa
Lsat_1_v5_gn_8_74960 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 109471497-109472496 Lactuca sativa
Lsat_1_v5_gn_8_74960 2.0kb upstream 2.0kb upstream 8103   true Lsat_1_v8_lg_8: 109472497-109480599 Lactuca sativa
Lsat_1_v5_gn_8_74960 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 109478600-109480599 Lactuca sativa
Lsat_1_v5_gn_8_74960 2.0kb downstream 2.0kb downstream 8103   true Lsat_1_v8_lg_8: 109470497-109478599 Lactuca sativa
Lsat_1_v5_gn_8_74960 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 109470497-109472496 Lactuca sativa
Lsat_1_v5_gn_8_74960 5.0kb upstream 5.0kb upstream 11103   true Lsat_1_v8_lg_8: 109472497-109483599 Lactuca sativa
Lsat_1_v5_gn_8_74960 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 109478600-109483599 Lactuca sativa
Lsat_1_v5_gn_8_74960 5.0kb downstream 5.0kb downstream 11103   true Lsat_1_v8_lg_8: 109467497-109478599 Lactuca sativa
Lsat_1_v5_gn_8_74960 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 109467497-109472496 Lactuca sativa
Lsat_1_v5_gn_8_74960 10.0kb upstream 10.0kb upstream 16103   true Lsat_1_v8_lg_8: 109472497-109488599 Lactuca sativa
Lsat_1_v5_gn_8_74960 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 109478600-109488599 Lactuca sativa
Lsat_1_v5_gn_8_74960 10.0kb downstream 10.0kb downstream 16103   true Lsat_1_v8_lg_8: 109462497-109478599 Lactuca sativa
Lsat_1_v5_gn_8_74960 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 109462497-109472496 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121471606 5263 Asterids View MSA
123739134 5271 Pentapetalae View MSA
122791595 5272 Eudicot View MSA
122044417 5273 Angiosperm View MSA
121347707 5274 Embryophyte View MSA
123428836 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain