Gene : Lsat_1_v5_gn_8_78921 L. sativa V8
Defline:  (1 of 5) PTHR11177//PTHR11177:SF186 - CHITINASE // SUBFAMILY NOT NAMED Genomic Order:  2388
Name:  ? Lsat_1_v5_gn_8_78921 Secondary Identifier:  ? PAC:38949157
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6902 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_78921 0.5kb upstream 0.5kb upstream 3537   true Lsat_1_v8_lg_8: 112686447-112689983 Lactuca sativa
Lsat_1_v5_gn_8_78921 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 112689484-112689983 Lactuca sativa
Lsat_1_v5_gn_8_78921 0.5kb downstream 0.5kb downstream 3537   true Lsat_1_v8_lg_8: 112685947-112689483 Lactuca sativa
Lsat_1_v5_gn_8_78921 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 112685947-112686446 Lactuca sativa
Lsat_1_v5_gn_8_78921 1.0kb upstream 1.0kb upstream 4037   true Lsat_1_v8_lg_8: 112686447-112690483 Lactuca sativa
Lsat_1_v5_gn_8_78921 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 112689484-112690483 Lactuca sativa
Lsat_1_v5_gn_8_78921 1.0kb downstream 1.0kb downstream 4037   true Lsat_1_v8_lg_8: 112685447-112689483 Lactuca sativa
Lsat_1_v5_gn_8_78921 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 112685447-112686446 Lactuca sativa
Lsat_1_v5_gn_8_78921 2.0kb upstream 2.0kb upstream 5037   true Lsat_1_v8_lg_8: 112686447-112691483 Lactuca sativa
Lsat_1_v5_gn_8_78921 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 112689484-112691483 Lactuca sativa
Lsat_1_v5_gn_8_78921 2.0kb downstream 2.0kb downstream 5037   true Lsat_1_v8_lg_8: 112684447-112689483 Lactuca sativa
Lsat_1_v5_gn_8_78921 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 112684447-112686446 Lactuca sativa
Lsat_1_v5_gn_8_78921 5.0kb upstream 5.0kb upstream 8037   true Lsat_1_v8_lg_8: 112686447-112694483 Lactuca sativa
Lsat_1_v5_gn_8_78921 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 112689484-112694483 Lactuca sativa
Lsat_1_v5_gn_8_78921 5.0kb downstream 5.0kb downstream 8037   true Lsat_1_v8_lg_8: 112681447-112689483 Lactuca sativa
Lsat_1_v5_gn_8_78921 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 112681447-112686446 Lactuca sativa
Lsat_1_v5_gn_8_78921 10.0kb upstream 10.0kb upstream 13037   true Lsat_1_v8_lg_8: 112686447-112699483 Lactuca sativa
Lsat_1_v5_gn_8_78921 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 112689484-112699483 Lactuca sativa
Lsat_1_v5_gn_8_78921 10.0kb downstream 10.0kb downstream 13037   true Lsat_1_v8_lg_8: 112676447-112689483 Lactuca sativa
Lsat_1_v5_gn_8_78921 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 112676447-112686446 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780494 5273 Angiosperm View MSA
121464968 5263 Asterids View MSA
123746494 5271 Pentapetalae View MSA
122771936 5272 Eudicot View MSA
121052105 5274 Embryophyte View MSA
123092162 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain