Gene : Lsat_1_v5_gn_8_78840 L. sativa V8
Defline:  (1 of 4) PTHR24093//PTHR24093:SF289 - FAMILY NOT NAMED // CALCIUM-TRANSPORTING ATPASE 1, ENDOPLASMIC RETICULUM-TYPE-RELATED Genomic Order:  2384
Name:  ? Lsat_1_v5_gn_8_78840 Secondary Identifier:  ? PAC:38950851
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_78840 0.5kb upstream 0.5kb upstream 7213   true Lsat_1_v8_lg_8: 112635286-112642498 Lactuca sativa
Lsat_1_v5_gn_8_78840 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 112635286-112635785 Lactuca sativa
Lsat_1_v5_gn_8_78840 0.5kb downstream 0.5kb downstream 7213   true Lsat_1_v8_lg_8: 112635786-112642998 Lactuca sativa
Lsat_1_v5_gn_8_78840 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 112642499-112642998 Lactuca sativa
Lsat_1_v5_gn_8_78840 1.0kb upstream 1.0kb upstream 7713   true Lsat_1_v8_lg_8: 112634786-112642498 Lactuca sativa
Lsat_1_v5_gn_8_78840 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 112634786-112635785 Lactuca sativa
Lsat_1_v5_gn_8_78840 1.0kb downstream 1.0kb downstream 7713   true Lsat_1_v8_lg_8: 112635786-112643498 Lactuca sativa
Lsat_1_v5_gn_8_78840 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 112642499-112643498 Lactuca sativa
Lsat_1_v5_gn_8_78840 2.0kb upstream 2.0kb upstream 8713   true Lsat_1_v8_lg_8: 112633786-112642498 Lactuca sativa
Lsat_1_v5_gn_8_78840 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 112633786-112635785 Lactuca sativa
Lsat_1_v5_gn_8_78840 2.0kb downstream 2.0kb downstream 8713   true Lsat_1_v8_lg_8: 112635786-112644498 Lactuca sativa
Lsat_1_v5_gn_8_78840 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 112642499-112644498 Lactuca sativa
Lsat_1_v5_gn_8_78840 5.0kb upstream 5.0kb upstream 11713   true Lsat_1_v8_lg_8: 112630786-112642498 Lactuca sativa
Lsat_1_v5_gn_8_78840 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 112630786-112635785 Lactuca sativa
Lsat_1_v5_gn_8_78840 5.0kb downstream 5.0kb downstream 11713   true Lsat_1_v8_lg_8: 112635786-112647498 Lactuca sativa
Lsat_1_v5_gn_8_78840 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 112642499-112647498 Lactuca sativa
Lsat_1_v5_gn_8_78840 10.0kb upstream 10.0kb upstream 16713   true Lsat_1_v8_lg_8: 112625786-112642498 Lactuca sativa
Lsat_1_v5_gn_8_78840 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 112625786-112635785 Lactuca sativa
Lsat_1_v5_gn_8_78840 10.0kb downstream 10.0kb downstream 16713   true Lsat_1_v8_lg_8: 112635786-112652498 Lactuca sativa
Lsat_1_v5_gn_8_78840 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 112642499-112652498 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121476798 5263 Asterids View MSA
123740324 5271 Pentapetalae View MSA
122794495 5272 Eudicot View MSA
122046254 5273 Angiosperm View MSA
121349492 5274 Embryophyte View MSA
123427421 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain