Gene : Lsat_1_v5_gn_8_5021 L. sativa V8
Defline:  (1 of 5) K00797 - spermidine synthase (speE, SRM) Genomic Order:  186
Name:  ? Lsat_1_v5_gn_8_5021 Secondary Identifier:  ? PAC:38950653
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa BSUBPOLYAMSYN-PWY Lactuca sativa pathologic  
Lsativa PWY-7528 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_5021 0.5kb upstream 0.5kb upstream 2280   true Lsat_1_v8_lg_8: 6890626-6892905 Lactuca sativa
Lsat_1_v5_gn_8_5021 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 6890626-6891125 Lactuca sativa
Lsat_1_v5_gn_8_5021 0.5kb downstream 0.5kb downstream 2280   true Lsat_1_v8_lg_8: 6891126-6893405 Lactuca sativa
Lsat_1_v5_gn_8_5021 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 6892906-6893405 Lactuca sativa
Lsat_1_v5_gn_8_5021 1.0kb upstream 1.0kb upstream 2780   true Lsat_1_v8_lg_8: 6890126-6892905 Lactuca sativa
Lsat_1_v5_gn_8_5021 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 6890126-6891125 Lactuca sativa
Lsat_1_v5_gn_8_5021 1.0kb downstream 1.0kb downstream 2780   true Lsat_1_v8_lg_8: 6891126-6893905 Lactuca sativa
Lsat_1_v5_gn_8_5021 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 6892906-6893905 Lactuca sativa
Lsat_1_v5_gn_8_5021 2.0kb upstream 2.0kb upstream 3780   true Lsat_1_v8_lg_8: 6889126-6892905 Lactuca sativa
Lsat_1_v5_gn_8_5021 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 6889126-6891125 Lactuca sativa
Lsat_1_v5_gn_8_5021 2.0kb downstream 2.0kb downstream 3780   true Lsat_1_v8_lg_8: 6891126-6894905 Lactuca sativa
Lsat_1_v5_gn_8_5021 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 6892906-6894905 Lactuca sativa
Lsat_1_v5_gn_8_5021 5.0kb upstream 5.0kb upstream 6780   true Lsat_1_v8_lg_8: 6886126-6892905 Lactuca sativa
Lsat_1_v5_gn_8_5021 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 6886126-6891125 Lactuca sativa
Lsat_1_v5_gn_8_5021 5.0kb downstream 5.0kb downstream 6780   true Lsat_1_v8_lg_8: 6891126-6897905 Lactuca sativa
Lsat_1_v5_gn_8_5021 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 6892906-6897905 Lactuca sativa
Lsat_1_v5_gn_8_5021 10.0kb upstream 10.0kb upstream 11780   true Lsat_1_v8_lg_8: 6881126-6892905 Lactuca sativa
Lsat_1_v5_gn_8_5021 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 6881126-6891125 Lactuca sativa
Lsat_1_v5_gn_8_5021 10.0kb downstream 10.0kb downstream 11780   true Lsat_1_v8_lg_8: 6891126-6902905 Lactuca sativa
Lsat_1_v5_gn_8_5021 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 6892906-6902905 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473129 5263 Asterids View MSA
123739892 5271 Pentapetalae View MSA
122785821 5272 Eudicot View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain