Gene : Lsat_1_v5_gn_8_62500 L. sativa V8
Defline:  (1 of 7) 6.1.1.21 - Histidine--tRNA ligase / Histidyl-tRNA synthetase Genomic Order:  1865
Name:  ? Lsat_1_v5_gn_8_62500 Secondary Identifier:  ? PAC:38948981
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa TRNA-CHARGING-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_62500 0.5kb upstream 0.5kb upstream 4162   true Lsat_1_v8_lg_8: 84768270-84772431 Lactuca sativa
Lsat_1_v5_gn_8_62500 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 84768270-84768769 Lactuca sativa
Lsat_1_v5_gn_8_62500 0.5kb downstream 0.5kb downstream 4162   true Lsat_1_v8_lg_8: 84768770-84772931 Lactuca sativa
Lsat_1_v5_gn_8_62500 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 84772432-84772931 Lactuca sativa
Lsat_1_v5_gn_8_62500 1.0kb upstream 1.0kb upstream 4662   true Lsat_1_v8_lg_8: 84767770-84772431 Lactuca sativa
Lsat_1_v5_gn_8_62500 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 84767770-84768769 Lactuca sativa
Lsat_1_v5_gn_8_62500 1.0kb downstream 1.0kb downstream 4662   true Lsat_1_v8_lg_8: 84768770-84773431 Lactuca sativa
Lsat_1_v5_gn_8_62500 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 84772432-84773431 Lactuca sativa
Lsat_1_v5_gn_8_62500 2.0kb upstream 2.0kb upstream 5662   true Lsat_1_v8_lg_8: 84766770-84772431 Lactuca sativa
Lsat_1_v5_gn_8_62500 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 84766770-84768769 Lactuca sativa
Lsat_1_v5_gn_8_62500 2.0kb downstream 2.0kb downstream 5662   true Lsat_1_v8_lg_8: 84768770-84774431 Lactuca sativa
Lsat_1_v5_gn_8_62500 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 84772432-84774431 Lactuca sativa
Lsat_1_v5_gn_8_62500 5.0kb upstream 5.0kb upstream 8662   true Lsat_1_v8_lg_8: 84763770-84772431 Lactuca sativa
Lsat_1_v5_gn_8_62500 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 84763770-84768769 Lactuca sativa
Lsat_1_v5_gn_8_62500 5.0kb downstream 5.0kb downstream 8662   true Lsat_1_v8_lg_8: 84768770-84777431 Lactuca sativa
Lsat_1_v5_gn_8_62500 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 84772432-84777431 Lactuca sativa
Lsat_1_v5_gn_8_62500 10.0kb upstream 10.0kb upstream 13662   true Lsat_1_v8_lg_8: 84758770-84772431 Lactuca sativa
Lsat_1_v5_gn_8_62500 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 84758770-84768769 Lactuca sativa
Lsat_1_v5_gn_8_62500 10.0kb downstream 10.0kb downstream 13662   true Lsat_1_v8_lg_8: 84768770-84782431 Lactuca sativa
Lsat_1_v5_gn_8_62500 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 84772432-84782431 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469919 5263 Asterids View MSA
123750553 5271 Pentapetalae View MSA
122793881 5272 Eudicot View MSA
122047537 5273 Angiosperm View MSA
121349127 5274 Embryophyte View MSA
123427860 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain