Gene : Lsat_1_v5_gn_8_85760 L. sativa V8
Defline:  (1 of 34) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  2680
Name:  ? Lsat_1_v5_gn_8_85760 Secondary Identifier:  ? PAC:38950147
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_85760 0.5kb upstream 0.5kb upstream 2801   true Lsat_1_v8_lg_8: 124394309-124397109 Lactuca sativa
Lsat_1_v5_gn_8_85760 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 124396610-124397109 Lactuca sativa
Lsat_1_v5_gn_8_85760 0.5kb downstream 0.5kb downstream 2801   true Lsat_1_v8_lg_8: 124393809-124396609 Lactuca sativa
Lsat_1_v5_gn_8_85760 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 124393809-124394308 Lactuca sativa
Lsat_1_v5_gn_8_85760 1.0kb upstream 1.0kb upstream 3301   true Lsat_1_v8_lg_8: 124394309-124397609 Lactuca sativa
Lsat_1_v5_gn_8_85760 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 124396610-124397609 Lactuca sativa
Lsat_1_v5_gn_8_85760 1.0kb downstream 1.0kb downstream 3301   true Lsat_1_v8_lg_8: 124393309-124396609 Lactuca sativa
Lsat_1_v5_gn_8_85760 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 124393309-124394308 Lactuca sativa
Lsat_1_v5_gn_8_85760 2.0kb upstream 2.0kb upstream 4301   true Lsat_1_v8_lg_8: 124394309-124398609 Lactuca sativa
Lsat_1_v5_gn_8_85760 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 124396610-124398609 Lactuca sativa
Lsat_1_v5_gn_8_85760 2.0kb downstream 2.0kb downstream 4301   true Lsat_1_v8_lg_8: 124392309-124396609 Lactuca sativa
Lsat_1_v5_gn_8_85760 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 124392309-124394308 Lactuca sativa
Lsat_1_v5_gn_8_85760 5.0kb upstream 5.0kb upstream 7301   true Lsat_1_v8_lg_8: 124394309-124401609 Lactuca sativa
Lsat_1_v5_gn_8_85760 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 124396610-124401609 Lactuca sativa
Lsat_1_v5_gn_8_85760 5.0kb downstream 5.0kb downstream 7301   true Lsat_1_v8_lg_8: 124389309-124396609 Lactuca sativa
Lsat_1_v5_gn_8_85760 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 124389309-124394308 Lactuca sativa
Lsat_1_v5_gn_8_85760 10.0kb upstream 10.0kb upstream 12301   true Lsat_1_v8_lg_8: 124394309-124406609 Lactuca sativa
Lsat_1_v5_gn_8_85760 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 124396610-124406609 Lactuca sativa
Lsat_1_v5_gn_8_85760 10.0kb downstream 10.0kb downstream 12301   true Lsat_1_v8_lg_8: 124384309-124396609 Lactuca sativa
Lsat_1_v5_gn_8_85760 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 124384309-124394308 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026431 5273 Angiosperm View MSA
121480196 5263 Asterids View MSA
123751274 5271 Pentapetalae View MSA
122794411 5272 Eudicot View MSA
121348629 5274 Embryophyte View MSA
123380947 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain