Gene : Lsat_1_v5_gn_9_17860 L. sativa V8
Defline:  (1 of 3) PTHR23315//PTHR23315:SF75 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 9 Genomic Order:  471
Name:  ? Lsat_1_v5_gn_9_17860 Secondary Identifier:  ? PAC:38925200
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7511 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_9_17860 0.5kb upstream 0.5kb upstream 2574   true Lsat_1_v8_lg_9: 16561820-16564393 Lactuca sativa
Lsat_1_v5_gn_9_17860 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_9: 16561820-16562319 Lactuca sativa
Lsat_1_v5_gn_9_17860 0.5kb downstream 0.5kb downstream 2574   true Lsat_1_v8_lg_9: 16562320-16564893 Lactuca sativa
Lsat_1_v5_gn_9_17860 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_9: 16564394-16564893 Lactuca sativa
Lsat_1_v5_gn_9_17860 1.0kb upstream 1.0kb upstream 3074   true Lsat_1_v8_lg_9: 16561320-16564393 Lactuca sativa
Lsat_1_v5_gn_9_17860 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_9: 16561320-16562319 Lactuca sativa
Lsat_1_v5_gn_9_17860 1.0kb downstream 1.0kb downstream 3074   true Lsat_1_v8_lg_9: 16562320-16565393 Lactuca sativa
Lsat_1_v5_gn_9_17860 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_9: 16564394-16565393 Lactuca sativa
Lsat_1_v5_gn_9_17860 2.0kb upstream 2.0kb upstream 4074   true Lsat_1_v8_lg_9: 16560320-16564393 Lactuca sativa
Lsat_1_v5_gn_9_17860 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_9: 16560320-16562319 Lactuca sativa
Lsat_1_v5_gn_9_17860 2.0kb downstream 2.0kb downstream 4074   true Lsat_1_v8_lg_9: 16562320-16566393 Lactuca sativa
Lsat_1_v5_gn_9_17860 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_9: 16564394-16566393 Lactuca sativa
Lsat_1_v5_gn_9_17860 5.0kb upstream 5.0kb upstream 7074   true Lsat_1_v8_lg_9: 16557320-16564393 Lactuca sativa
Lsat_1_v5_gn_9_17860 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_9: 16557320-16562319 Lactuca sativa
Lsat_1_v5_gn_9_17860 5.0kb downstream 5.0kb downstream 7074   true Lsat_1_v8_lg_9: 16562320-16569393 Lactuca sativa
Lsat_1_v5_gn_9_17860 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_9: 16564394-16569393 Lactuca sativa
Lsat_1_v5_gn_9_17860 10.0kb upstream 10.0kb upstream 12074   true Lsat_1_v8_lg_9: 16552320-16564393 Lactuca sativa
Lsat_1_v5_gn_9_17860 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_9: 16552320-16562319 Lactuca sativa
Lsat_1_v5_gn_9_17860 10.0kb downstream 10.0kb downstream 12074   true Lsat_1_v8_lg_9: 16562320-16574393 Lactuca sativa
Lsat_1_v5_gn_9_17860 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_9: 16564394-16574393 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029179 5273 Angiosperm View MSA
121475184 5263 Asterids View MSA
123745896 5271 Pentapetalae View MSA
122785914 5272 Eudicot View MSA
121350406 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain