Gene : Lsat_1_v5_gn_9_32260 L. sativa V8
Defline:  (1 of 4) PTHR15141//PTHR15141:SF40 - TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3 // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED Genomic Order:  1057
Name:  ? Lsat_1_v5_gn_9_32260 Secondary Identifier:  ? PAC:38922780
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_9_32260 0.5kb upstream 0.5kb upstream 6117   true Lsat_1_v8_lg_9: 34587106-34593222 Lactuca sativa
Lsat_1_v5_gn_9_32260 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_9: 34587106-34587605 Lactuca sativa
Lsat_1_v5_gn_9_32260 0.5kb downstream 0.5kb downstream 6117   true Lsat_1_v8_lg_9: 34587606-34593722 Lactuca sativa
Lsat_1_v5_gn_9_32260 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_9: 34593223-34593722 Lactuca sativa
Lsat_1_v5_gn_9_32260 1.0kb upstream 1.0kb upstream 6617   true Lsat_1_v8_lg_9: 34586606-34593222 Lactuca sativa
Lsat_1_v5_gn_9_32260 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_9: 34586606-34587605 Lactuca sativa
Lsat_1_v5_gn_9_32260 1.0kb downstream 1.0kb downstream 6617   true Lsat_1_v8_lg_9: 34587606-34594222 Lactuca sativa
Lsat_1_v5_gn_9_32260 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_9: 34593223-34594222 Lactuca sativa
Lsat_1_v5_gn_9_32260 2.0kb upstream 2.0kb upstream 7617   true Lsat_1_v8_lg_9: 34585606-34593222 Lactuca sativa
Lsat_1_v5_gn_9_32260 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_9: 34585606-34587605 Lactuca sativa
Lsat_1_v5_gn_9_32260 2.0kb downstream 2.0kb downstream 7617   true Lsat_1_v8_lg_9: 34587606-34595222 Lactuca sativa
Lsat_1_v5_gn_9_32260 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_9: 34593223-34595222 Lactuca sativa
Lsat_1_v5_gn_9_32260 5.0kb upstream 5.0kb upstream 10617   true Lsat_1_v8_lg_9: 34582606-34593222 Lactuca sativa
Lsat_1_v5_gn_9_32260 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_9: 34582606-34587605 Lactuca sativa
Lsat_1_v5_gn_9_32260 5.0kb downstream 5.0kb downstream 10617   true Lsat_1_v8_lg_9: 34587606-34598222 Lactuca sativa
Lsat_1_v5_gn_9_32260 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_9: 34593223-34598222 Lactuca sativa
Lsat_1_v5_gn_9_32260 10.0kb upstream 10.0kb upstream 15617   true Lsat_1_v8_lg_9: 34577606-34593222 Lactuca sativa
Lsat_1_v5_gn_9_32260 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_9: 34577606-34587605 Lactuca sativa
Lsat_1_v5_gn_9_32260 10.0kb downstream 10.0kb downstream 15617   true Lsat_1_v8_lg_9: 34587606-34603222 Lactuca sativa
Lsat_1_v5_gn_9_32260 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_9: 34593223-34603222 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121453117 5263 Asterids View MSA
123747167 5271 Pentapetalae View MSA
122796041 5272 Eudicot View MSA
122045393 5273 Angiosperm View MSA
121348214 5274 Embryophyte View MSA
123380774 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain