Gene : Lsat_1_v5_gn_9_116880 L. sativa V8
Defline:  (1 of 3) K11450 - lysine-specific histone demethylase 1 [EC:1.-.-.-] (AOF2, LSD1) Genomic Order:  3636
Name:  ? Lsat_1_v5_gn_9_116880 Secondary Identifier:  ? PAC:38927401
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6441 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_9_116880 0.5kb upstream 0.5kb upstream 2845   true Lsat_1_v8_lg_9: 189385704-189388548 Lactuca sativa
Lsat_1_v5_gn_9_116880 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_9: 189385704-189386203 Lactuca sativa
Lsat_1_v5_gn_9_116880 0.5kb downstream 0.5kb downstream 2845   true Lsat_1_v8_lg_9: 189386204-189389048 Lactuca sativa
Lsat_1_v5_gn_9_116880 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_9: 189388549-189389048 Lactuca sativa
Lsat_1_v5_gn_9_116880 1.0kb upstream 1.0kb upstream 3345   true Lsat_1_v8_lg_9: 189385204-189388548 Lactuca sativa
Lsat_1_v5_gn_9_116880 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_9: 189385204-189386203 Lactuca sativa
Lsat_1_v5_gn_9_116880 1.0kb downstream 1.0kb downstream 3345   true Lsat_1_v8_lg_9: 189386204-189389548 Lactuca sativa
Lsat_1_v5_gn_9_116880 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_9: 189388549-189389548 Lactuca sativa
Lsat_1_v5_gn_9_116880 2.0kb upstream 2.0kb upstream 4345   true Lsat_1_v8_lg_9: 189384204-189388548 Lactuca sativa
Lsat_1_v5_gn_9_116880 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_9: 189384204-189386203 Lactuca sativa
Lsat_1_v5_gn_9_116880 2.0kb downstream 2.0kb downstream 4345   true Lsat_1_v8_lg_9: 189386204-189390548 Lactuca sativa
Lsat_1_v5_gn_9_116880 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_9: 189388549-189390548 Lactuca sativa
Lsat_1_v5_gn_9_116880 5.0kb upstream 5.0kb upstream 7345   true Lsat_1_v8_lg_9: 189381204-189388548 Lactuca sativa
Lsat_1_v5_gn_9_116880 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_9: 189381204-189386203 Lactuca sativa
Lsat_1_v5_gn_9_116880 5.0kb downstream 5.0kb downstream 7345   true Lsat_1_v8_lg_9: 189386204-189393548 Lactuca sativa
Lsat_1_v5_gn_9_116880 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_9: 189388549-189393548 Lactuca sativa
Lsat_1_v5_gn_9_116880 10.0kb upstream 10.0kb upstream 12345   true Lsat_1_v8_lg_9: 189376204-189388548 Lactuca sativa
Lsat_1_v5_gn_9_116880 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_9: 189376204-189386203 Lactuca sativa
Lsat_1_v5_gn_9_116880 10.0kb downstream 10.0kb downstream 12345   true Lsat_1_v8_lg_9: 189386204-189398548 Lactuca sativa
Lsat_1_v5_gn_9_116880 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_9: 189388549-189398548 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479487 5263 Asterids View MSA
123738234 5271 Pentapetalae View MSA
122786001 5272 Eudicot View MSA
122043910 5273 Angiosperm View MSA
121310209 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain