Gene : Lsat_1_v5_gn_9_12280 L. sativa V8
Defline:  (1 of 26) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  415
Name:  ? Lsat_1_v5_gn_9_12280 Secondary Identifier:  ? PAC:38927093
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_9_12280 0.5kb upstream 0.5kb upstream 4038   true Lsat_1_v8_lg_9: 14834234-14838271 Lactuca sativa
Lsat_1_v5_gn_9_12280 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_9: 14834234-14834733 Lactuca sativa
Lsat_1_v5_gn_9_12280 0.5kb downstream 0.5kb downstream 4038   true Lsat_1_v8_lg_9: 14834734-14838771 Lactuca sativa
Lsat_1_v5_gn_9_12280 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_9: 14838272-14838771 Lactuca sativa
Lsat_1_v5_gn_9_12280 1.0kb upstream 1.0kb upstream 4538   true Lsat_1_v8_lg_9: 14833734-14838271 Lactuca sativa
Lsat_1_v5_gn_9_12280 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_9: 14833734-14834733 Lactuca sativa
Lsat_1_v5_gn_9_12280 1.0kb downstream 1.0kb downstream 4538   true Lsat_1_v8_lg_9: 14834734-14839271 Lactuca sativa
Lsat_1_v5_gn_9_12280 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_9: 14838272-14839271 Lactuca sativa
Lsat_1_v5_gn_9_12280 2.0kb upstream 2.0kb upstream 5538   true Lsat_1_v8_lg_9: 14832734-14838271 Lactuca sativa
Lsat_1_v5_gn_9_12280 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_9: 14832734-14834733 Lactuca sativa
Lsat_1_v5_gn_9_12280 2.0kb downstream 2.0kb downstream 5538   true Lsat_1_v8_lg_9: 14834734-14840271 Lactuca sativa
Lsat_1_v5_gn_9_12280 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_9: 14838272-14840271 Lactuca sativa
Lsat_1_v5_gn_9_12280 5.0kb upstream 5.0kb upstream 8538   true Lsat_1_v8_lg_9: 14829734-14838271 Lactuca sativa
Lsat_1_v5_gn_9_12280 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_9: 14829734-14834733 Lactuca sativa
Lsat_1_v5_gn_9_12280 5.0kb downstream 5.0kb downstream 8538   true Lsat_1_v8_lg_9: 14834734-14843271 Lactuca sativa
Lsat_1_v5_gn_9_12280 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_9: 14838272-14843271 Lactuca sativa
Lsat_1_v5_gn_9_12280 10.0kb upstream 10.0kb upstream 13538   true Lsat_1_v8_lg_9: 14824734-14838271 Lactuca sativa
Lsat_1_v5_gn_9_12280 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_9: 14824734-14834733 Lactuca sativa
Lsat_1_v5_gn_9_12280 10.0kb downstream 10.0kb downstream 13538   true Lsat_1_v8_lg_9: 14834734-14848271 Lactuca sativa
Lsat_1_v5_gn_9_12280 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_9: 14838272-14848271 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479189 5263 Asterids View MSA
123743822 5271 Pentapetalae View MSA
122789563 5272 Eudicot View MSA
122044004 5273 Angiosperm View MSA
121350656 5274 Embryophyte View MSA
123381839 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain