Gene : Lsat_1_v5_gn_9_48281 L. sativa V8
Defline:  (1 of 7) K00021 - hydroxymethylglutaryl-CoA reductase (NADPH) (HMGCR) Genomic Order:  1697
Name:  ? Lsat_1_v5_gn_9_48281 Secondary Identifier:  ? PAC:38926481
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-5910 Lactuca sativa pathologic  
Lsativa PWY-922 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_9_48281 0.5kb upstream 0.5kb upstream 3866   true Lsat_1_v8_lg_9: 56734648-56738513 Lactuca sativa
Lsat_1_v5_gn_9_48281 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_9: 56738014-56738513 Lactuca sativa
Lsat_1_v5_gn_9_48281 0.5kb downstream 0.5kb downstream 3866   true Lsat_1_v8_lg_9: 56734148-56738013 Lactuca sativa
Lsat_1_v5_gn_9_48281 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_9: 56734148-56734647 Lactuca sativa
Lsat_1_v5_gn_9_48281 1.0kb upstream 1.0kb upstream 4366   true Lsat_1_v8_lg_9: 56734648-56739013 Lactuca sativa
Lsat_1_v5_gn_9_48281 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_9: 56738014-56739013 Lactuca sativa
Lsat_1_v5_gn_9_48281 1.0kb downstream 1.0kb downstream 4366   true Lsat_1_v8_lg_9: 56733648-56738013 Lactuca sativa
Lsat_1_v5_gn_9_48281 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_9: 56733648-56734647 Lactuca sativa
Lsat_1_v5_gn_9_48281 2.0kb upstream 2.0kb upstream 5366   true Lsat_1_v8_lg_9: 56734648-56740013 Lactuca sativa
Lsat_1_v5_gn_9_48281 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_9: 56738014-56740013 Lactuca sativa
Lsat_1_v5_gn_9_48281 2.0kb downstream 2.0kb downstream 5366   true Lsat_1_v8_lg_9: 56732648-56738013 Lactuca sativa
Lsat_1_v5_gn_9_48281 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_9: 56732648-56734647 Lactuca sativa
Lsat_1_v5_gn_9_48281 5.0kb upstream 5.0kb upstream 8366   true Lsat_1_v8_lg_9: 56734648-56743013 Lactuca sativa
Lsat_1_v5_gn_9_48281 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_9: 56738014-56743013 Lactuca sativa
Lsat_1_v5_gn_9_48281 5.0kb downstream 5.0kb downstream 8366   true Lsat_1_v8_lg_9: 56729648-56738013 Lactuca sativa
Lsat_1_v5_gn_9_48281 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_9: 56729648-56734647 Lactuca sativa
Lsat_1_v5_gn_9_48281 10.0kb upstream 10.0kb upstream 13366   true Lsat_1_v8_lg_9: 56734648-56748013 Lactuca sativa
Lsat_1_v5_gn_9_48281 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_9: 56738014-56748013 Lactuca sativa
Lsat_1_v5_gn_9_48281 10.0kb downstream 10.0kb downstream 13366   true Lsat_1_v8_lg_9: 56724648-56738013 Lactuca sativa
Lsat_1_v5_gn_9_48281 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_9: 56724648-56734647 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472239 5263 Asterids View MSA
123751436 5271 Pentapetalae View MSA
122791870 5272 Eudicot View MSA
122051392 5273 Angiosperm View MSA
121350752 5274 Embryophyte View MSA
123381875 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain