The genome data in PhytoMine are generated from organisms sequence by the JGI, collaborators and other members of the plant genome community. The genome annotations were done internally or by outside groups. Read more

Query for genomics:

• Peptide sequence for a specific transcript
• CDS sequence for a specific transcript
• Nucleotide sequence for a specific transcript

More queries

The annotated protein-coding transcripts from the Phytozome collection. Read more

Query for transcripts:

More queries

The proteome for different organisms and their InterProScan analyses. Read more

Query for proteins:

• All homologs of a specific gene in any organism
• Proteins with a PFAM Domain in a specific organism.
• GO Terms for a protein or list of proteins
• GO-Annotations
• Consensus sequence for a specific protein family
• GO term lookup.
• Protein Domains with GO terms.
• Proteins with Two Specific PFAM Domains

More queries

Orthologs, paralogs and families of similar proteins. Read more

Query for comparative:

More queries

A compendium of RNA-seq data for organisms in Phytozome. Some data were acquired by members of the community. Recent data are unpublished data from the Plant Gene Atlas Project. Read more

Query for expression:

• Expression score for one specific gene
• Expression score for all genes in an organism
• Expression score for all mRNAs in an organism

More queries