Gene : Carub.0004s0449 C. rubella v1.1
Defline:  (1 of 20) 5.3.4.1 - Protein disulfide-isomerase / S-S rearrangase Genomic Order:  449
Name:  ? Carub.0004s0449 Secondary Identifier:  ? PAC:39238282
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Genome feature

Region: gene Length: 1385  
Location: scaffold_4:2052278-2053662 reverse strand

Ontology Annotations

There are 8 ontology annotations.
Ontology Term Name Namespace Description
GO GO:0031072 heat shock protein binding molecular_function Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock.
GO GO:0051082 unfolded protein binding molecular_function Interacting selectively and non-covalently with an unfolded protein.
PANTHER PTHR15852     FAMILY NOT NAMED
PANTHER PTHR15852:SF13     SUBFAMILY NOT NAMED
ENZYME 5.3.4.1 S-S rearrangase   Protein disulfide-isomerase
InterPro IPR001305      
SSF SSF57938 0037245   DnaJ/Hsp40 cysteine-rich domain
GENE3D G3DSA:2.10.230.10 Chaperone; DNAj Protein; Chain    

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s0449 0.5kb upstream 0.5kb upstream 1885 true scaffold_4: 2052278-2054162 Capsella rubella
Carub.0004s0449 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 2053663-2054162 Capsella rubella
Carub.0004s0449 0.5kb downstream 0.5kb downstream 1885 true scaffold_4: 2051778-2053662 Capsella rubella
Carub.0004s0449 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 2051778-2052277 Capsella rubella
Carub.0004s0449 1.0kb upstream 1.0kb upstream 2385 true scaffold_4: 2052278-2054662 Capsella rubella
Carub.0004s0449 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 2053663-2054662 Capsella rubella
Carub.0004s0449 1.0kb downstream 1.0kb downstream 2385 true scaffold_4: 2051278-2053662 Capsella rubella
Carub.0004s0449 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 2051278-2052277 Capsella rubella
Carub.0004s0449 2.0kb upstream 2.0kb upstream 3385 true scaffold_4: 2052278-2055662 Capsella rubella
Carub.0004s0449 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 2053663-2055662 Capsella rubella
Carub.0004s0449 2.0kb downstream 2.0kb downstream 3385 true scaffold_4: 2050278-2053662 Capsella rubella
Carub.0004s0449 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 2050278-2052277 Capsella rubella
Carub.0004s0449 5.0kb upstream 5.0kb upstream 6385 true scaffold_4: 2052278-2058662 Capsella rubella
Carub.0004s0449 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 2053663-2058662 Capsella rubella
Carub.0004s0449 5.0kb downstream 5.0kb downstream 6385 true scaffold_4: 2047278-2053662 Capsella rubella
Carub.0004s0449 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 2047278-2052277 Capsella rubella
Carub.0004s0449 10.0kb upstream 10.0kb upstream 11385 true scaffold_4: 2052278-2063662 Capsella rubella
Carub.0004s0449 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 2053663-2063662 Capsella rubella
Carub.0004s0449 10.0kb downstream 10.0kb downstream 11385 true scaffold_4: 2042278-2053662 Capsella rubella
Carub.0004s0449 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 2042278-2052277 Capsella rubella
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10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370117 5261 Brassicaceae View MSA
123827675 5264 Brassicales-Malvales View MSA
124336564 5266 SBM View MSA
124244977 5268 Malvidae View MSA
124063702 5270 Rosid View MSA
123736816 5271 Pentapetalae View MSA
122790293 5272 Eudicot View MSA
122047663 5273 Angiosperm View MSA
121346624 5274 Embryophyte View MSA
123425591 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain