Gene : Carub.0004s0677 C. rubella v1.1
Defline:  (1 of 1) PTHR35703//PTHR35703:SF1 - FAMILY NOT NAMED // INACTIVE HEME OXYGENASE 2, CHLOROPLASTIC-RELATED Genomic Order:  677
Name:  ? Carub.0004s0677 Secondary Identifier:  ? PAC:39236892
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5874 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s0677 0.5kb upstream 0.5kb upstream 15518 true scaffold_4: 4157732-4173249 Capsella rubella
Carub.0004s0677 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 4172750-4173249 Capsella rubella
Carub.0004s0677 0.5kb downstream 0.5kb downstream 15518 true scaffold_4: 4157232-4172749 Capsella rubella
Carub.0004s0677 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 4157232-4157731 Capsella rubella
Carub.0004s0677 1.0kb upstream 1.0kb upstream 16018 true scaffold_4: 4157732-4173749 Capsella rubella
Carub.0004s0677 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 4172750-4173749 Capsella rubella
Carub.0004s0677 1.0kb downstream 1.0kb downstream 16018 true scaffold_4: 4156732-4172749 Capsella rubella
Carub.0004s0677 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 4156732-4157731 Capsella rubella
Carub.0004s0677 2.0kb upstream 2.0kb upstream 17018 true scaffold_4: 4157732-4174749 Capsella rubella
Carub.0004s0677 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 4172750-4174749 Capsella rubella
Carub.0004s0677 2.0kb downstream 2.0kb downstream 17018 true scaffold_4: 4155732-4172749 Capsella rubella
Carub.0004s0677 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 4155732-4157731 Capsella rubella
Carub.0004s0677 5.0kb upstream 5.0kb upstream 20018 true scaffold_4: 4157732-4177749 Capsella rubella
Carub.0004s0677 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 4172750-4177749 Capsella rubella
Carub.0004s0677 5.0kb downstream 5.0kb downstream 20018 true scaffold_4: 4152732-4172749 Capsella rubella
Carub.0004s0677 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 4152732-4157731 Capsella rubella
Carub.0004s0677 10.0kb upstream 10.0kb upstream 25018 true scaffold_4: 4157732-4182749 Capsella rubella
Carub.0004s0677 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 4172750-4182749 Capsella rubella
Carub.0004s0677 10.0kb downstream 10.0kb downstream 25018 true scaffold_4: 4147732-4172749 Capsella rubella
Carub.0004s0677 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 4147732-4157731 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374362 5261 Brassicaceae View MSA
123837004 5264 Brassicales-Malvales View MSA
124341792 5266 SBM View MSA
124242184 5268 Malvidae View MSA
124063078 5270 Rosid View MSA
123741198 5271 Pentapetalae View MSA
122793273 5272 Eudicot View MSA
122045580 5273 Angiosperm View MSA
121310469 5274 Embryophyte View MSA
123347942 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain