Gene : Carub.0004s0725 C. rubella v1.1
Defline:  (1 of 1) 4.1.3.4 - Hydroxymethylglutaryl-CoA lyase / HMG-CoA lyase Genomic Order:  725
Name:  ? Carub.0004s0725 Secondary Identifier:  ? PAC:39236727
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella LEU-DEG2-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s0725 0.5kb upstream 0.5kb upstream 3799 true scaffold_4: 5459417-5463215 Capsella rubella
Carub.0004s0725 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 5462716-5463215 Capsella rubella
Carub.0004s0725 0.5kb downstream 0.5kb downstream 3799 true scaffold_4: 5458917-5462715 Capsella rubella
Carub.0004s0725 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 5458917-5459416 Capsella rubella
Carub.0004s0725 1.0kb upstream 1.0kb upstream 4299 true scaffold_4: 5459417-5463715 Capsella rubella
Carub.0004s0725 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 5462716-5463715 Capsella rubella
Carub.0004s0725 1.0kb downstream 1.0kb downstream 4299 true scaffold_4: 5458417-5462715 Capsella rubella
Carub.0004s0725 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 5458417-5459416 Capsella rubella
Carub.0004s0725 2.0kb upstream 2.0kb upstream 5299 true scaffold_4: 5459417-5464715 Capsella rubella
Carub.0004s0725 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 5462716-5464715 Capsella rubella
Carub.0004s0725 2.0kb downstream 2.0kb downstream 5299 true scaffold_4: 5457417-5462715 Capsella rubella
Carub.0004s0725 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 5457417-5459416 Capsella rubella
Carub.0004s0725 5.0kb upstream 5.0kb upstream 8299 true scaffold_4: 5459417-5467715 Capsella rubella
Carub.0004s0725 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 5462716-5467715 Capsella rubella
Carub.0004s0725 5.0kb downstream 5.0kb downstream 8299 true scaffold_4: 5454417-5462715 Capsella rubella
Carub.0004s0725 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 5454417-5459416 Capsella rubella
Carub.0004s0725 10.0kb upstream 10.0kb upstream 13299 true scaffold_4: 5459417-5472715 Capsella rubella
Carub.0004s0725 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 5462716-5472715 Capsella rubella
Carub.0004s0725 10.0kb downstream 10.0kb downstream 13299 true scaffold_4: 5449417-5462715 Capsella rubella
Carub.0004s0725 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 5449417-5459416 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364667 5261 Brassicaceae View MSA
123834510 5264 Brassicales-Malvales View MSA
124345181 5266 SBM View MSA
124245610 5268 Malvidae View MSA
124074648 5270 Rosid View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain