Gene : Carub.0004s1137 C. rubella v1.1
Defline:  (1 of 3) PTHR11709:SF68 - LACCASE-13-RELATED Genomic Order:  1137
Name:  ? Carub.0004s1137 Secondary Identifier:  ? PAC:39237638
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1137 0.5kb upstream 0.5kb upstream 3255 true scaffold_4: 7571865-7575119 Capsella rubella
Carub.0004s1137 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 7574620-7575119 Capsella rubella
Carub.0004s1137 0.5kb downstream 0.5kb downstream 3255 true scaffold_4: 7571365-7574619 Capsella rubella
Carub.0004s1137 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 7571365-7571864 Capsella rubella
Carub.0004s1137 1.0kb upstream 1.0kb upstream 3755 true scaffold_4: 7571865-7575619 Capsella rubella
Carub.0004s1137 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 7574620-7575619 Capsella rubella
Carub.0004s1137 1.0kb downstream 1.0kb downstream 3755 true scaffold_4: 7570865-7574619 Capsella rubella
Carub.0004s1137 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 7570865-7571864 Capsella rubella
Carub.0004s1137 2.0kb upstream 2.0kb upstream 4755 true scaffold_4: 7571865-7576619 Capsella rubella
Carub.0004s1137 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 7574620-7576619 Capsella rubella
Carub.0004s1137 2.0kb downstream 2.0kb downstream 4755 true scaffold_4: 7569865-7574619 Capsella rubella
Carub.0004s1137 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 7569865-7571864 Capsella rubella
Carub.0004s1137 5.0kb upstream 5.0kb upstream 7755 true scaffold_4: 7571865-7579619 Capsella rubella
Carub.0004s1137 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 7574620-7579619 Capsella rubella
Carub.0004s1137 5.0kb downstream 5.0kb downstream 7755 true scaffold_4: 7566865-7574619 Capsella rubella
Carub.0004s1137 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 7566865-7571864 Capsella rubella
Carub.0004s1137 10.0kb upstream 10.0kb upstream 12755 true scaffold_4: 7571865-7584619 Capsella rubella
Carub.0004s1137 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 7574620-7584619 Capsella rubella
Carub.0004s1137 10.0kb downstream 10.0kb downstream 12755 true scaffold_4: 7561865-7574619 Capsella rubella
Carub.0004s1137 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 7561865-7571864 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123752293 5271 Pentapetalae View MSA
122374100 5261 Brassicaceae View MSA
123837819 5264 Brassicales-Malvales View MSA
124341545 5266 SBM View MSA
124238390 5268 Malvidae View MSA
124075203 5270 Rosid View MSA
122774464 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain