Gene : Carub.0004s1358 C. rubella v1.1
Defline:  (1 of 2) 2.7.7.15 - Choline-phosphate cytidylyltransferase / Phosphorylcholine transferase Genomic Order:  1358
Name:  ? Carub.0004s1358 Secondary Identifier:  ? PAC:39237727
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-3561 Capsella rubella pathologic  
Crubella PWY3O-450 Capsella rubella pathologic  
Crubella PWY4FS-2 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1358 0.5kb upstream 0.5kb upstream 3416 true scaffold_4: 8481752-8485167 Capsella rubella
Carub.0004s1358 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 8481752-8482251 Capsella rubella
Carub.0004s1358 0.5kb downstream 0.5kb downstream 3416 true scaffold_4: 8482252-8485667 Capsella rubella
Carub.0004s1358 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 8485168-8485667 Capsella rubella
Carub.0004s1358 1.0kb upstream 1.0kb upstream 3916 true scaffold_4: 8481252-8485167 Capsella rubella
Carub.0004s1358 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 8481252-8482251 Capsella rubella
Carub.0004s1358 1.0kb downstream 1.0kb downstream 3916 true scaffold_4: 8482252-8486167 Capsella rubella
Carub.0004s1358 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 8485168-8486167 Capsella rubella
Carub.0004s1358 2.0kb upstream 2.0kb upstream 4916 true scaffold_4: 8480252-8485167 Capsella rubella
Carub.0004s1358 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 8480252-8482251 Capsella rubella
Carub.0004s1358 2.0kb downstream 2.0kb downstream 4916 true scaffold_4: 8482252-8487167 Capsella rubella
Carub.0004s1358 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 8485168-8487167 Capsella rubella
Carub.0004s1358 5.0kb upstream 5.0kb upstream 7916 true scaffold_4: 8477252-8485167 Capsella rubella
Carub.0004s1358 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 8477252-8482251 Capsella rubella
Carub.0004s1358 5.0kb downstream 5.0kb downstream 7916 true scaffold_4: 8482252-8490167 Capsella rubella
Carub.0004s1358 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 8485168-8490167 Capsella rubella
Carub.0004s1358 10.0kb upstream 10.0kb upstream 12916 true scaffold_4: 8472252-8485167 Capsella rubella
Carub.0004s1358 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 8472252-8482251 Capsella rubella
Carub.0004s1358 10.0kb downstream 10.0kb downstream 12916 true scaffold_4: 8482252-8495167 Capsella rubella
Carub.0004s1358 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 8485168-8495167 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370712 5261 Brassicaceae View MSA
123838726 5264 Brassicales-Malvales View MSA
124345144 5266 SBM View MSA
124245941 5268 Malvidae View MSA
124069985 5270 Rosid View MSA
123749333 5271 Pentapetalae View MSA
122792398 5272 Eudicot View MSA
122047197 5273 Angiosperm View MSA
121348751 5274 Embryophyte View MSA
123428717 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain