Gene : Carub.0004s1219 C. rubella v1.1
Defline:  (1 of 1) K14455 - aspartate aminotransferase, mitochondrial (GOT2) Genomic Order:  1219
Name:  ? Carub.0004s1219 Secondary Identifier:  ? PAC:39238448
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ASPARTATE-DEG1-PWY Capsella rubella pathologic  
Crubella ASPARTATESYN-PWY Capsella rubella pathologic  
Crubella PWY-3001 Capsella rubella pathologic  
Crubella PWY-7115 Capsella rubella pathologic  
Crubella PWY-7117 Capsella rubella pathologic  
Crubella THRESYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1219 0.5kb upstream 0.5kb upstream 3685 true scaffold_4: 7932017-7935701 Capsella rubella
Carub.0004s1219 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 7932017-7932516 Capsella rubella
Carub.0004s1219 0.5kb downstream 0.5kb downstream 3685 true scaffold_4: 7932517-7936201 Capsella rubella
Carub.0004s1219 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 7935702-7936201 Capsella rubella
Carub.0004s1219 1.0kb upstream 1.0kb upstream 4185 true scaffold_4: 7931517-7935701 Capsella rubella
Carub.0004s1219 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 7931517-7932516 Capsella rubella
Carub.0004s1219 1.0kb downstream 1.0kb downstream 4185 true scaffold_4: 7932517-7936701 Capsella rubella
Carub.0004s1219 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 7935702-7936701 Capsella rubella
Carub.0004s1219 2.0kb upstream 2.0kb upstream 5185 true scaffold_4: 7930517-7935701 Capsella rubella
Carub.0004s1219 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 7930517-7932516 Capsella rubella
Carub.0004s1219 2.0kb downstream 2.0kb downstream 5185 true scaffold_4: 7932517-7937701 Capsella rubella
Carub.0004s1219 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 7935702-7937701 Capsella rubella
Carub.0004s1219 5.0kb upstream 5.0kb upstream 8185 true scaffold_4: 7927517-7935701 Capsella rubella
Carub.0004s1219 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 7927517-7932516 Capsella rubella
Carub.0004s1219 5.0kb downstream 5.0kb downstream 8185 true scaffold_4: 7932517-7940701 Capsella rubella
Carub.0004s1219 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 7935702-7940701 Capsella rubella
Carub.0004s1219 10.0kb upstream 10.0kb upstream 13185 true scaffold_4: 7922517-7935701 Capsella rubella
Carub.0004s1219 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 7922517-7932516 Capsella rubella
Carub.0004s1219 10.0kb downstream 10.0kb downstream 13185 true scaffold_4: 7932517-7945701 Capsella rubella
Carub.0004s1219 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 7935702-7945701 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368520 5261 Brassicaceae View MSA
123839385 5264 Brassicales-Malvales View MSA
124344803 5266 SBM View MSA
124241659 5268 Malvidae View MSA
124063482 5270 Rosid View MSA
123737145 5271 Pentapetalae View MSA
122793092 5272 Eudicot View MSA
122046072 5273 Angiosperm View MSA
121344214 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain