Gene : Carub.0004s1287 C. rubella v1.1
Defline:  (1 of 2) PTHR11592:SF33 - GLUTATHIONE PEROXIDASE 2-RELATED Genomic Order:  1287
Name:  ? Carub.0004s1287 Secondary Identifier:  ? PAC:39237305
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-4081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1287 0.5kb upstream 0.5kb upstream 2398 true scaffold_4: 8210909-8213306 Capsella rubella
Carub.0004s1287 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 8212807-8213306 Capsella rubella
Carub.0004s1287 0.5kb downstream 0.5kb downstream 2398 true scaffold_4: 8210409-8212806 Capsella rubella
Carub.0004s1287 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 8210409-8210908 Capsella rubella
Carub.0004s1287 1.0kb upstream 1.0kb upstream 2898 true scaffold_4: 8210909-8213806 Capsella rubella
Carub.0004s1287 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 8212807-8213806 Capsella rubella
Carub.0004s1287 1.0kb downstream 1.0kb downstream 2898 true scaffold_4: 8209909-8212806 Capsella rubella
Carub.0004s1287 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 8209909-8210908 Capsella rubella
Carub.0004s1287 2.0kb upstream 2.0kb upstream 3898 true scaffold_4: 8210909-8214806 Capsella rubella
Carub.0004s1287 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 8212807-8214806 Capsella rubella
Carub.0004s1287 2.0kb downstream 2.0kb downstream 3898 true scaffold_4: 8208909-8212806 Capsella rubella
Carub.0004s1287 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 8208909-8210908 Capsella rubella
Carub.0004s1287 5.0kb upstream 5.0kb upstream 6898 true scaffold_4: 8210909-8217806 Capsella rubella
Carub.0004s1287 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 8212807-8217806 Capsella rubella
Carub.0004s1287 5.0kb downstream 5.0kb downstream 6898 true scaffold_4: 8205909-8212806 Capsella rubella
Carub.0004s1287 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 8205909-8210908 Capsella rubella
Carub.0004s1287 10.0kb upstream 10.0kb upstream 11898 true scaffold_4: 8210909-8222806 Capsella rubella
Carub.0004s1287 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 8212807-8222806 Capsella rubella
Carub.0004s1287 10.0kb downstream 10.0kb downstream 11898 true scaffold_4: 8200909-8212806 Capsella rubella
Carub.0004s1287 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 8200909-8210908 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377470 5261 Brassicaceae View MSA
123839339 5264 Brassicales-Malvales View MSA
124341945 5266 SBM View MSA
124254095 5268 Malvidae View MSA
124060403 5270 Rosid View MSA
123752336 5271 Pentapetalae View MSA
122792727 5272 Eudicot View MSA
122049273 5273 Angiosperm View MSA
121349724 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain