Gene : Carub.0004s1627 C. rubella v1.1
Defline:  (1 of 3) K00162 - pyruvate dehydrogenase E1 component beta subunit (PDHB, pdhB) Genomic Order:  1627
Name:  ? Carub.0004s1627 Secondary Identifier:  ? PAC:39238198
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5173 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PYRUVDEHYD-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1627 0.5kb upstream 0.5kb upstream 2946 true scaffold_4: 9481411-9484356 Capsella rubella
Carub.0004s1627 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9483857-9484356 Capsella rubella
Carub.0004s1627 0.5kb downstream 0.5kb downstream 2946 true scaffold_4: 9480911-9483856 Capsella rubella
Carub.0004s1627 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9480911-9481410 Capsella rubella
Carub.0004s1627 1.0kb upstream 1.0kb upstream 3446 true scaffold_4: 9481411-9484856 Capsella rubella
Carub.0004s1627 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9483857-9484856 Capsella rubella
Carub.0004s1627 1.0kb downstream 1.0kb downstream 3446 true scaffold_4: 9480411-9483856 Capsella rubella
Carub.0004s1627 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9480411-9481410 Capsella rubella
Carub.0004s1627 2.0kb upstream 2.0kb upstream 4446 true scaffold_4: 9481411-9485856 Capsella rubella
Carub.0004s1627 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9483857-9485856 Capsella rubella
Carub.0004s1627 2.0kb downstream 2.0kb downstream 4446 true scaffold_4: 9479411-9483856 Capsella rubella
Carub.0004s1627 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9479411-9481410 Capsella rubella
Carub.0004s1627 5.0kb upstream 5.0kb upstream 7446 true scaffold_4: 9481411-9488856 Capsella rubella
Carub.0004s1627 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9483857-9488856 Capsella rubella
Carub.0004s1627 5.0kb downstream 5.0kb downstream 7446 true scaffold_4: 9476411-9483856 Capsella rubella
Carub.0004s1627 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9476411-9481410 Capsella rubella
Carub.0004s1627 10.0kb upstream 10.0kb upstream 12446 true scaffold_4: 9481411-9493856 Capsella rubella
Carub.0004s1627 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9483857-9493856 Capsella rubella
Carub.0004s1627 10.0kb downstream 10.0kb downstream 12446 true scaffold_4: 9471411-9483856 Capsella rubella
Carub.0004s1627 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9471411-9481410 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375501 5261 Brassicaceae View MSA
123840734 5264 Brassicales-Malvales View MSA
124338432 5266 SBM View MSA
124241225 5268 Malvidae View MSA
124062960 5270 Rosid View MSA
123741192 5271 Pentapetalae View MSA
122797029 5272 Eudicot View MSA
122045305 5273 Angiosperm View MSA
121346397 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain