Gene : Carub.0004s1398 C. rubella v1.1
Defline:  (1 of 1) PTHR33271//PTHR33271:SF7 - FAMILY NOT NAMED // PLASTID TRANSCRIPTIONALLY ACTIVE 18 Genomic Order:  1398
Name:  ? Carub.0004s1398 Secondary Identifier:  ? PAC:39237736
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1398 0.5kb upstream 0.5kb upstream 1674 true scaffold_4: 8638036-8639709 Capsella rubella
Carub.0004s1398 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 8638036-8638535 Capsella rubella
Carub.0004s1398 0.5kb downstream 0.5kb downstream 1674 true scaffold_4: 8638536-8640209 Capsella rubella
Carub.0004s1398 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 8639710-8640209 Capsella rubella
Carub.0004s1398 1.0kb upstream 1.0kb upstream 2174 true scaffold_4: 8637536-8639709 Capsella rubella
Carub.0004s1398 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 8637536-8638535 Capsella rubella
Carub.0004s1398 1.0kb downstream 1.0kb downstream 2174 true scaffold_4: 8638536-8640709 Capsella rubella
Carub.0004s1398 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 8639710-8640709 Capsella rubella
Carub.0004s1398 2.0kb upstream 2.0kb upstream 3174 true scaffold_4: 8636536-8639709 Capsella rubella
Carub.0004s1398 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 8636536-8638535 Capsella rubella
Carub.0004s1398 2.0kb downstream 2.0kb downstream 3174 true scaffold_4: 8638536-8641709 Capsella rubella
Carub.0004s1398 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 8639710-8641709 Capsella rubella
Carub.0004s1398 5.0kb upstream 5.0kb upstream 6174 true scaffold_4: 8633536-8639709 Capsella rubella
Carub.0004s1398 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 8633536-8638535 Capsella rubella
Carub.0004s1398 5.0kb downstream 5.0kb downstream 6174 true scaffold_4: 8638536-8644709 Capsella rubella
Carub.0004s1398 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 8639710-8644709 Capsella rubella
Carub.0004s1398 10.0kb upstream 10.0kb upstream 11174 true scaffold_4: 8628536-8639709 Capsella rubella
Carub.0004s1398 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 8628536-8638535 Capsella rubella
Carub.0004s1398 10.0kb downstream 10.0kb downstream 11174 true scaffold_4: 8638536-8649709 Capsella rubella
Carub.0004s1398 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 8639710-8649709 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365655 5261 Brassicaceae View MSA
123832756 5264 Brassicales-Malvales View MSA
124346131 5266 SBM View MSA
124237058 5268 Malvidae View MSA
124065223 5270 Rosid View MSA
123741295 5271 Pentapetalae View MSA
122787769 5272 Eudicot View MSA
122043400 5273 Angiosperm View MSA
121346471 5274 Embryophyte View MSA
123380389 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain