Gene : Carub.0004s1427 C. rubella v1.1
Defline:  (1 of 1) PTHR37173:SF1 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  1427
Name:  ? Carub.0004s1427 Secondary Identifier:  ? PAC:39237148
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1427 0.5kb upstream 0.5kb upstream 2548 true scaffold_4: 8738901-8741448 Capsella rubella
Carub.0004s1427 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 8740949-8741448 Capsella rubella
Carub.0004s1427 0.5kb downstream 0.5kb downstream 2548 true scaffold_4: 8738401-8740948 Capsella rubella
Carub.0004s1427 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 8738401-8738900 Capsella rubella
Carub.0004s1427 1.0kb upstream 1.0kb upstream 3048 true scaffold_4: 8738901-8741948 Capsella rubella
Carub.0004s1427 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 8740949-8741948 Capsella rubella
Carub.0004s1427 1.0kb downstream 1.0kb downstream 3048 true scaffold_4: 8737901-8740948 Capsella rubella
Carub.0004s1427 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 8737901-8738900 Capsella rubella
Carub.0004s1427 2.0kb upstream 2.0kb upstream 4048 true scaffold_4: 8738901-8742948 Capsella rubella
Carub.0004s1427 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 8740949-8742948 Capsella rubella
Carub.0004s1427 2.0kb downstream 2.0kb downstream 4048 true scaffold_4: 8736901-8740948 Capsella rubella
Carub.0004s1427 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 8736901-8738900 Capsella rubella
Carub.0004s1427 5.0kb upstream 5.0kb upstream 7048 true scaffold_4: 8738901-8745948 Capsella rubella
Carub.0004s1427 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 8740949-8745948 Capsella rubella
Carub.0004s1427 5.0kb downstream 5.0kb downstream 7048 true scaffold_4: 8733901-8740948 Capsella rubella
Carub.0004s1427 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 8733901-8738900 Capsella rubella
Carub.0004s1427 10.0kb upstream 10.0kb upstream 12048 true scaffold_4: 8738901-8750948 Capsella rubella
Carub.0004s1427 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 8740949-8750948 Capsella rubella
Carub.0004s1427 10.0kb downstream 10.0kb downstream 12048 true scaffold_4: 8728901-8740948 Capsella rubella
Carub.0004s1427 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 8728901-8738900 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363572 5261 Brassicaceae View MSA
123834376 5264 Brassicales-Malvales View MSA
124341089 5266 SBM View MSA
124250614 5268 Malvidae View MSA
124065426 5270 Rosid View MSA
123746195 5271 Pentapetalae View MSA
122787235 5272 Eudicot View MSA
122045095 5273 Angiosperm View MSA
121345714 5274 Embryophyte View MSA
123425917 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain