Gene : Carub.0004s1799 C. rubella v1.1
Defline:  (1 of 1) 5.3.1.16 - 1-(5-phosphoribosyl)-5- ((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase / Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Genomic Order:  1799
Name:  ? Carub.0004s1799 Secondary Identifier:  ? PAC:39235945
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella HISTSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s1799 0.5kb upstream 0.5kb upstream 2345 true scaffold_4: 10156301-10158645 Capsella rubella
Carub.0004s1799 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 10158146-10158645 Capsella rubella
Carub.0004s1799 0.5kb downstream 0.5kb downstream 2345 true scaffold_4: 10155801-10158145 Capsella rubella
Carub.0004s1799 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 10155801-10156300 Capsella rubella
Carub.0004s1799 1.0kb upstream 1.0kb upstream 2845 true scaffold_4: 10156301-10159145 Capsella rubella
Carub.0004s1799 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 10158146-10159145 Capsella rubella
Carub.0004s1799 1.0kb downstream 1.0kb downstream 2845 true scaffold_4: 10155301-10158145 Capsella rubella
Carub.0004s1799 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 10155301-10156300 Capsella rubella
Carub.0004s1799 2.0kb upstream 2.0kb upstream 3845 true scaffold_4: 10156301-10160145 Capsella rubella
Carub.0004s1799 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 10158146-10160145 Capsella rubella
Carub.0004s1799 2.0kb downstream 2.0kb downstream 3845 true scaffold_4: 10154301-10158145 Capsella rubella
Carub.0004s1799 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 10154301-10156300 Capsella rubella
Carub.0004s1799 5.0kb upstream 5.0kb upstream 6845 true scaffold_4: 10156301-10163145 Capsella rubella
Carub.0004s1799 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 10158146-10163145 Capsella rubella
Carub.0004s1799 5.0kb downstream 5.0kb downstream 6845 true scaffold_4: 10151301-10158145 Capsella rubella
Carub.0004s1799 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 10151301-10156300 Capsella rubella
Carub.0004s1799 10.0kb upstream 10.0kb upstream 11845 true scaffold_4: 10156301-10168145 Capsella rubella
Carub.0004s1799 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 10158146-10168145 Capsella rubella
Carub.0004s1799 10.0kb downstream 10.0kb downstream 11845 true scaffold_4: 10146301-10158145 Capsella rubella
Carub.0004s1799 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 10146301-10156300 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041281 5273 Angiosperm View MSA
122376497 5261 Brassicaceae View MSA
123835580 5264 Brassicales-Malvales View MSA
124343226 5266 SBM View MSA
124249241 5268 Malvidae View MSA
124061773 5270 Rosid View MSA
123737700 5271 Pentapetalae View MSA
122790553 5272 Eudicot View MSA
121347171 5274 Embryophyte View MSA
123424389 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain