Gene : Carub.0004s2378 C. rubella v1.1
Defline:  (1 of 1) PTHR31235//PTHR31235:SF51 - FAMILY NOT NAMED // PEROXIDASE 25 Genomic Order:  2378
Name:  ? Carub.0004s2378 Secondary Identifier:  ? PAC:39238775
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  
Crubella PWY-7214 Capsella rubella pathologic  
Crubella PWY-7445 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2378 0.5kb upstream 0.5kb upstream 2790 true scaffold_4: 12434539-12437328 Capsella rubella
Carub.0004s2378 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 12436829-12437328 Capsella rubella
Carub.0004s2378 0.5kb downstream 0.5kb downstream 2790 true scaffold_4: 12434039-12436828 Capsella rubella
Carub.0004s2378 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 12434039-12434538 Capsella rubella
Carub.0004s2378 1.0kb upstream 1.0kb upstream 3290 true scaffold_4: 12434539-12437828 Capsella rubella
Carub.0004s2378 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 12436829-12437828 Capsella rubella
Carub.0004s2378 1.0kb downstream 1.0kb downstream 3290 true scaffold_4: 12433539-12436828 Capsella rubella
Carub.0004s2378 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 12433539-12434538 Capsella rubella
Carub.0004s2378 2.0kb upstream 2.0kb upstream 4290 true scaffold_4: 12434539-12438828 Capsella rubella
Carub.0004s2378 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 12436829-12438828 Capsella rubella
Carub.0004s2378 2.0kb downstream 2.0kb downstream 4290 true scaffold_4: 12432539-12436828 Capsella rubella
Carub.0004s2378 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 12432539-12434538 Capsella rubella
Carub.0004s2378 5.0kb upstream 5.0kb upstream 7290 true scaffold_4: 12434539-12441828 Capsella rubella
Carub.0004s2378 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 12436829-12441828 Capsella rubella
Carub.0004s2378 5.0kb downstream 5.0kb downstream 7290 true scaffold_4: 12429539-12436828 Capsella rubella
Carub.0004s2378 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 12429539-12434538 Capsella rubella
Carub.0004s2378 10.0kb upstream 10.0kb upstream 12290 true scaffold_4: 12434539-12446828 Capsella rubella
Carub.0004s2378 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 12436829-12446828 Capsella rubella
Carub.0004s2378 10.0kb downstream 10.0kb downstream 12290 true scaffold_4: 12424539-12436828 Capsella rubella
Carub.0004s2378 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 12424539-12434538 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377007 5261 Brassicaceae View MSA
123836413 5264 Brassicales-Malvales View MSA
124342166 5266 SBM View MSA
124248571 5268 Malvidae View MSA
124066864 5270 Rosid View MSA
123752607 5271 Pentapetalae View MSA
122796741 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain