Gene : Carub.0004s2693 C. rubella v1.1
Defline:  (1 of 2) PTHR11739:SF8 - CITRATE SYNTHASE, MITOCHONDRIAL Genomic Order:  2693
Name:  ? Carub.0004s2693 Secondary Identifier:  ? PAC:39239071
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLYOXYLATE-BYPASS Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  
Crubella PWY-6549 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2693 0.5kb upstream 0.5kb upstream 4580 true scaffold_4: 13541996-13546575 Capsella rubella
Carub.0004s2693 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13541996-13542495 Capsella rubella
Carub.0004s2693 0.5kb downstream 0.5kb downstream 4580 true scaffold_4: 13542496-13547075 Capsella rubella
Carub.0004s2693 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13546576-13547075 Capsella rubella
Carub.0004s2693 1.0kb upstream 1.0kb upstream 5080 true scaffold_4: 13541496-13546575 Capsella rubella
Carub.0004s2693 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13541496-13542495 Capsella rubella
Carub.0004s2693 1.0kb downstream 1.0kb downstream 5080 true scaffold_4: 13542496-13547575 Capsella rubella
Carub.0004s2693 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13546576-13547575 Capsella rubella
Carub.0004s2693 2.0kb upstream 2.0kb upstream 6080 true scaffold_4: 13540496-13546575 Capsella rubella
Carub.0004s2693 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13540496-13542495 Capsella rubella
Carub.0004s2693 2.0kb downstream 2.0kb downstream 6080 true scaffold_4: 13542496-13548575 Capsella rubella
Carub.0004s2693 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13546576-13548575 Capsella rubella
Carub.0004s2693 5.0kb upstream 5.0kb upstream 9080 true scaffold_4: 13537496-13546575 Capsella rubella
Carub.0004s2693 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13537496-13542495 Capsella rubella
Carub.0004s2693 5.0kb downstream 5.0kb downstream 9080 true scaffold_4: 13542496-13551575 Capsella rubella
Carub.0004s2693 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13546576-13551575 Capsella rubella
Carub.0004s2693 10.0kb upstream 10.0kb upstream 14080 true scaffold_4: 13532496-13546575 Capsella rubella
Carub.0004s2693 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13532496-13542495 Capsella rubella
Carub.0004s2693 10.0kb downstream 10.0kb downstream 14080 true scaffold_4: 13542496-13556575 Capsella rubella
Carub.0004s2693 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13546576-13556575 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041314 5273 Angiosperm View MSA
122364825 5261 Brassicaceae View MSA
123832003 5264 Brassicales-Malvales View MSA
124343675 5266 SBM View MSA
124250397 5268 Malvidae View MSA
124068700 5270 Rosid View MSA
123737684 5271 Pentapetalae View MSA
122792616 5272 Eudicot View MSA
121345226 5274 Embryophyte View MSA
123424186 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain