Gene : Carub.0004s2756 C. rubella v1.1
Defline:  (1 of 1) PTHR23163//PTHR23163:SF3 - RING FINGER PROTEIN-RELATED // E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 Genomic Order:  2756
Name:  ? Carub.0004s2756 Secondary Identifier:  ? PAC:39236217
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2756 0.5kb upstream 0.5kb upstream 6852 true scaffold_4: 13769344-13776195 Capsella rubella
Carub.0004s2756 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13775696-13776195 Capsella rubella
Carub.0004s2756 0.5kb downstream 0.5kb downstream 6852 true scaffold_4: 13768844-13775695 Capsella rubella
Carub.0004s2756 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13768844-13769343 Capsella rubella
Carub.0004s2756 1.0kb upstream 1.0kb upstream 7352 true scaffold_4: 13769344-13776695 Capsella rubella
Carub.0004s2756 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13775696-13776695 Capsella rubella
Carub.0004s2756 1.0kb downstream 1.0kb downstream 7352 true scaffold_4: 13768344-13775695 Capsella rubella
Carub.0004s2756 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13768344-13769343 Capsella rubella
Carub.0004s2756 2.0kb upstream 2.0kb upstream 8352 true scaffold_4: 13769344-13777695 Capsella rubella
Carub.0004s2756 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13775696-13777695 Capsella rubella
Carub.0004s2756 2.0kb downstream 2.0kb downstream 8352 true scaffold_4: 13767344-13775695 Capsella rubella
Carub.0004s2756 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13767344-13769343 Capsella rubella
Carub.0004s2756 5.0kb upstream 5.0kb upstream 11352 true scaffold_4: 13769344-13780695 Capsella rubella
Carub.0004s2756 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13775696-13780695 Capsella rubella
Carub.0004s2756 5.0kb downstream 5.0kb downstream 11352 true scaffold_4: 13764344-13775695 Capsella rubella
Carub.0004s2756 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13764344-13769343 Capsella rubella
Carub.0004s2756 10.0kb upstream 10.0kb upstream 16352 true scaffold_4: 13769344-13785695 Capsella rubella
Carub.0004s2756 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13775696-13785695 Capsella rubella
Carub.0004s2756 10.0kb downstream 10.0kb downstream 16352 true scaffold_4: 13759344-13775695 Capsella rubella
Carub.0004s2756 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13759344-13769343 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364133 5261 Brassicaceae View MSA
123841035 5264 Brassicales-Malvales View MSA
124344060 5266 SBM View MSA
124251962 5268 Malvidae View MSA
124061906 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain