Gene : Carub.0004s2881 C. rubella v1.1
Defline:  (1 of 1) PTHR20881//PTHR20881:SF0 - 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE // 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE Genomic Order:  2881
Name:  ? Carub.0004s2881 Secondary Identifier:  ? PAC:39238772
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PANTO-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2881 0.5kb upstream 0.5kb upstream 2277 true scaffold_4: 14255182-14257458 Capsella rubella
Carub.0004s2881 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 14256959-14257458 Capsella rubella
Carub.0004s2881 0.5kb downstream 0.5kb downstream 2277 true scaffold_4: 14254682-14256958 Capsella rubella
Carub.0004s2881 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 14254682-14255181 Capsella rubella
Carub.0004s2881 1.0kb upstream 1.0kb upstream 2777 true scaffold_4: 14255182-14257958 Capsella rubella
Carub.0004s2881 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 14256959-14257958 Capsella rubella
Carub.0004s2881 1.0kb downstream 1.0kb downstream 2777 true scaffold_4: 14254182-14256958 Capsella rubella
Carub.0004s2881 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 14254182-14255181 Capsella rubella
Carub.0004s2881 2.0kb upstream 2.0kb upstream 3777 true scaffold_4: 14255182-14258958 Capsella rubella
Carub.0004s2881 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 14256959-14258958 Capsella rubella
Carub.0004s2881 2.0kb downstream 2.0kb downstream 3777 true scaffold_4: 14253182-14256958 Capsella rubella
Carub.0004s2881 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 14253182-14255181 Capsella rubella
Carub.0004s2881 5.0kb upstream 5.0kb upstream 6777 true scaffold_4: 14255182-14261958 Capsella rubella
Carub.0004s2881 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 14256959-14261958 Capsella rubella
Carub.0004s2881 5.0kb downstream 5.0kb downstream 6777 true scaffold_4: 14250182-14256958 Capsella rubella
Carub.0004s2881 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 14250182-14255181 Capsella rubella
Carub.0004s2881 10.0kb upstream 10.0kb upstream 11777 true scaffold_4: 14255182-14266958 Capsella rubella
Carub.0004s2881 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 14256959-14266958 Capsella rubella
Carub.0004s2881 10.0kb downstream 10.0kb downstream 11777 true scaffold_4: 14245182-14256958 Capsella rubella
Carub.0004s2881 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 14245182-14255181 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368160 5261 Brassicaceae View MSA
123840931 5264 Brassicales-Malvales View MSA
124337427 5266 SBM View MSA
124240313 5268 Malvidae View MSA
124063716 5270 Rosid View MSA
123736873 5271 Pentapetalae View MSA
122793216 5272 Eudicot View MSA
122047605 5273 Angiosperm View MSA
121346037 5274 Embryophyte View MSA
123424122 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain