Gene : Carub.0004s2953 C. rubella v1.1
Defline:  (1 of 1) PTHR33222//PTHR33222:SF9 - FAMILY NOT NAMED // PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTIC Genomic Order:  2953
Name:  ? Carub.0004s2953 Secondary Identifier:  ? PAC:39238242
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-101 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0004s2953 0.5kb upstream 0.5kb upstream 2091 true scaffold_4: 14551747-14553837 Capsella rubella
Carub.0004s2953 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 14551747-14552246 Capsella rubella
Carub.0004s2953 0.5kb downstream 0.5kb downstream 2091 true scaffold_4: 14552247-14554337 Capsella rubella
Carub.0004s2953 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 14553838-14554337 Capsella rubella
Carub.0004s2953 1.0kb upstream 1.0kb upstream 2591 true scaffold_4: 14551247-14553837 Capsella rubella
Carub.0004s2953 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 14551247-14552246 Capsella rubella
Carub.0004s2953 1.0kb downstream 1.0kb downstream 2591 true scaffold_4: 14552247-14554837 Capsella rubella
Carub.0004s2953 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 14553838-14554837 Capsella rubella
Carub.0004s2953 2.0kb upstream 2.0kb upstream 3591 true scaffold_4: 14550247-14553837 Capsella rubella
Carub.0004s2953 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 14550247-14552246 Capsella rubella
Carub.0004s2953 2.0kb downstream 2.0kb downstream 3591 true scaffold_4: 14552247-14555837 Capsella rubella
Carub.0004s2953 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 14553838-14555837 Capsella rubella
Carub.0004s2953 5.0kb upstream 5.0kb upstream 6591 true scaffold_4: 14547247-14553837 Capsella rubella
Carub.0004s2953 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 14547247-14552246 Capsella rubella
Carub.0004s2953 5.0kb downstream 5.0kb downstream 6591 true scaffold_4: 14552247-14558837 Capsella rubella
Carub.0004s2953 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 14553838-14558837 Capsella rubella
Carub.0004s2953 10.0kb upstream 10.0kb upstream 11591 true scaffold_4: 14542247-14553837 Capsella rubella
Carub.0004s2953 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 14542247-14552246 Capsella rubella
Carub.0004s2953 10.0kb downstream 10.0kb downstream 11591 true scaffold_4: 14552247-14563837 Capsella rubella
Carub.0004s2953 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 14553838-14563837 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367981 5261 Brassicaceae View MSA
123829580 5264 Brassicales-Malvales View MSA
124343674 5266 SBM View MSA
124248900 5268 Malvidae View MSA
124068427 5270 Rosid View MSA
123747086 5271 Pentapetalae View MSA
122793406 5272 Eudicot View MSA
122042391 5273 Angiosperm View MSA
121347672 5274 Embryophyte View MSA
123425732 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain