Gene : Carub.0005s0087 C. rubella v1.1
Defline:  (1 of 5) PTHR10161 - TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 Genomic Order:  87
Name:  ? Carub.0005s0087 Secondary Identifier:  ? PAC:39225433
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5083 Capsella rubella pathologic  
Crubella PWY-6348 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0087 0.5kb upstream 0.5kb upstream 3231 true scaffold_5: 338153-341383 Capsella rubella
Carub.0005s0087 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 340884-341383 Capsella rubella
Carub.0005s0087 0.5kb downstream 0.5kb downstream 3231 true scaffold_5: 337653-340883 Capsella rubella
Carub.0005s0087 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 337653-338152 Capsella rubella
Carub.0005s0087 1.0kb upstream 1.0kb upstream 3731 true scaffold_5: 338153-341883 Capsella rubella
Carub.0005s0087 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 340884-341883 Capsella rubella
Carub.0005s0087 1.0kb downstream 1.0kb downstream 3731 true scaffold_5: 337153-340883 Capsella rubella
Carub.0005s0087 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 337153-338152 Capsella rubella
Carub.0005s0087 2.0kb upstream 2.0kb upstream 4731 true scaffold_5: 338153-342883 Capsella rubella
Carub.0005s0087 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 340884-342883 Capsella rubella
Carub.0005s0087 2.0kb downstream 2.0kb downstream 4731 true scaffold_5: 336153-340883 Capsella rubella
Carub.0005s0087 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 336153-338152 Capsella rubella
Carub.0005s0087 5.0kb upstream 5.0kb upstream 7731 true scaffold_5: 338153-345883 Capsella rubella
Carub.0005s0087 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 340884-345883 Capsella rubella
Carub.0005s0087 5.0kb downstream 5.0kb downstream 7731 true scaffold_5: 333153-340883 Capsella rubella
Carub.0005s0087 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 333153-338152 Capsella rubella
Carub.0005s0087 10.0kb upstream 10.0kb upstream 12731 true scaffold_5: 338153-350883 Capsella rubella
Carub.0005s0087 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 340884-350883 Capsella rubella
Carub.0005s0087 10.0kb downstream 10.0kb downstream 12731 true scaffold_5: 328153-340883 Capsella rubella
Carub.0005s0087 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 328153-338152 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371785 5261 Brassicaceae View MSA
123841578 5264 Brassicales-Malvales View MSA
124349660 5266 SBM View MSA
124248897 5268 Malvidae View MSA
124061132 5270 Rosid View MSA
123743122 5271 Pentapetalae View MSA
122795933 5272 Eudicot View MSA
122045102 5273 Angiosperm View MSA
121351076 5274 Embryophyte View MSA
123427142 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain