Gene : Carub.0005s0086 C. rubella v1.1
Defline:  (1 of 1) KOG2679 - Purple (tartrate-resistant) acid phosphatase Genomic Order:  86
Name:  ? Carub.0005s0086 Secondary Identifier:  ? PAC:39226606
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5083 Capsella rubella pathologic  
Crubella PWY-6348 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0086 0.5kb upstream 0.5kb upstream 3364 true scaffold_5: 334835-338198 Capsella rubella
Carub.0005s0086 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 337699-338198 Capsella rubella
Carub.0005s0086 0.5kb downstream 0.5kb downstream 3364 true scaffold_5: 334335-337698 Capsella rubella
Carub.0005s0086 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 334335-334834 Capsella rubella
Carub.0005s0086 1.0kb upstream 1.0kb upstream 3864 true scaffold_5: 334835-338698 Capsella rubella
Carub.0005s0086 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 337699-338698 Capsella rubella
Carub.0005s0086 1.0kb downstream 1.0kb downstream 3864 true scaffold_5: 333835-337698 Capsella rubella
Carub.0005s0086 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 333835-334834 Capsella rubella
Carub.0005s0086 2.0kb upstream 2.0kb upstream 4864 true scaffold_5: 334835-339698 Capsella rubella
Carub.0005s0086 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 337699-339698 Capsella rubella
Carub.0005s0086 2.0kb downstream 2.0kb downstream 4864 true scaffold_5: 332835-337698 Capsella rubella
Carub.0005s0086 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 332835-334834 Capsella rubella
Carub.0005s0086 5.0kb upstream 5.0kb upstream 7864 true scaffold_5: 334835-342698 Capsella rubella
Carub.0005s0086 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 337699-342698 Capsella rubella
Carub.0005s0086 5.0kb downstream 5.0kb downstream 7864 true scaffold_5: 329835-337698 Capsella rubella
Carub.0005s0086 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 329835-334834 Capsella rubella
Carub.0005s0086 10.0kb upstream 10.0kb upstream 12864 true scaffold_5: 334835-347698 Capsella rubella
Carub.0005s0086 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 337699-347698 Capsella rubella
Carub.0005s0086 10.0kb downstream 10.0kb downstream 12864 true scaffold_5: 324835-337698 Capsella rubella
Carub.0005s0086 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 324835-334834 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372081 5261 Brassicaceae View MSA
123800289 5264 Brassicales-Malvales View MSA
124344138 5266 SBM View MSA
124248897 5268 Malvidae View MSA
124061132 5270 Rosid View MSA
123743122 5271 Pentapetalae View MSA
122795933 5272 Eudicot View MSA
122045102 5273 Angiosperm View MSA
121351076 5274 Embryophyte View MSA
123427142 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain