Gene : Carub.0005s0545 C. rubella v1.1
Defline:  (1 of 1) PTHR11061//PTHR11061:SF29 - RNA M5U METHYLTRANSFERASE FAMILY // SUBFAMILY NOT NAMED Genomic Order:  545
Name:  ? Carub.0005s0545 Secondary Identifier:  ? PAC:39225581
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s0545 0.5kb upstream 0.5kb upstream 3762 true scaffold_5: 2200899-2204660 Capsella rubella
Carub.0005s0545 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2204161-2204660 Capsella rubella
Carub.0005s0545 0.5kb downstream 0.5kb downstream 3762 true scaffold_5: 2200399-2204160 Capsella rubella
Carub.0005s0545 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2200399-2200898 Capsella rubella
Carub.0005s0545 1.0kb upstream 1.0kb upstream 4262 true scaffold_5: 2200899-2205160 Capsella rubella
Carub.0005s0545 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2204161-2205160 Capsella rubella
Carub.0005s0545 1.0kb downstream 1.0kb downstream 4262 true scaffold_5: 2199899-2204160 Capsella rubella
Carub.0005s0545 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2199899-2200898 Capsella rubella
Carub.0005s0545 2.0kb upstream 2.0kb upstream 5262 true scaffold_5: 2200899-2206160 Capsella rubella
Carub.0005s0545 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2204161-2206160 Capsella rubella
Carub.0005s0545 2.0kb downstream 2.0kb downstream 5262 true scaffold_5: 2198899-2204160 Capsella rubella
Carub.0005s0545 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2198899-2200898 Capsella rubella
Carub.0005s0545 5.0kb upstream 5.0kb upstream 8262 true scaffold_5: 2200899-2209160 Capsella rubella
Carub.0005s0545 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2204161-2209160 Capsella rubella
Carub.0005s0545 5.0kb downstream 5.0kb downstream 8262 true scaffold_5: 2195899-2204160 Capsella rubella
Carub.0005s0545 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2195899-2200898 Capsella rubella
Carub.0005s0545 10.0kb upstream 10.0kb upstream 13262 true scaffold_5: 2200899-2214160 Capsella rubella
Carub.0005s0545 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2204161-2214160 Capsella rubella
Carub.0005s0545 10.0kb downstream 10.0kb downstream 13262 true scaffold_5: 2190899-2204160 Capsella rubella
Carub.0005s0545 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2190899-2200898 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375751 5261 Brassicaceae View MSA
123832680 5264 Brassicales-Malvales View MSA
124337597 5266 SBM View MSA
124241900 5268 Malvidae View MSA
124063737 5270 Rosid View MSA
123738222 5271 Pentapetalae View MSA
122796833 5272 Eudicot View MSA
122044630 5273 Angiosperm View MSA
121346457 5274 Embryophyte View MSA
123428846 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain