Gene : Carub.0005s1236 C. rubella v1.1
Defline:  (1 of 1) PTHR23012//PTHR23012:SF89 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Genomic Order:  1236
Name:  ? Carub.0005s1236 Secondary Identifier:  ? PAC:39226420
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1236 0.5kb upstream 0.5kb upstream 2150 true scaffold_5: 7091799-7093948 Capsella rubella
Carub.0005s1236 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 7091799-7092298 Capsella rubella
Carub.0005s1236 0.5kb downstream 0.5kb downstream 2150 true scaffold_5: 7092299-7094448 Capsella rubella
Carub.0005s1236 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 7093949-7094448 Capsella rubella
Carub.0005s1236 1.0kb upstream 1.0kb upstream 2650 true scaffold_5: 7091299-7093948 Capsella rubella
Carub.0005s1236 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 7091299-7092298 Capsella rubella
Carub.0005s1236 1.0kb downstream 1.0kb downstream 2650 true scaffold_5: 7092299-7094948 Capsella rubella
Carub.0005s1236 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 7093949-7094948 Capsella rubella
Carub.0005s1236 2.0kb upstream 2.0kb upstream 3650 true scaffold_5: 7090299-7093948 Capsella rubella
Carub.0005s1236 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 7090299-7092298 Capsella rubella
Carub.0005s1236 2.0kb downstream 2.0kb downstream 3650 true scaffold_5: 7092299-7095948 Capsella rubella
Carub.0005s1236 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 7093949-7095948 Capsella rubella
Carub.0005s1236 5.0kb upstream 5.0kb upstream 6650 true scaffold_5: 7087299-7093948 Capsella rubella
Carub.0005s1236 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 7087299-7092298 Capsella rubella
Carub.0005s1236 5.0kb downstream 5.0kb downstream 6650 true scaffold_5: 7092299-7098948 Capsella rubella
Carub.0005s1236 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 7093949-7098948 Capsella rubella
Carub.0005s1236 10.0kb upstream 10.0kb upstream 11650 true scaffold_5: 7082299-7093948 Capsella rubella
Carub.0005s1236 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 7082299-7092298 Capsella rubella
Carub.0005s1236 10.0kb downstream 10.0kb downstream 11650 true scaffold_5: 7092299-7103948 Capsella rubella
Carub.0005s1236 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 7093949-7103948 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041328 5273 Angiosperm View MSA
122372334 5261 Brassicaceae View MSA
123800339 5264 Brassicales-Malvales View MSA
124297760 5266 SBM View MSA
124250999 5268 Malvidae View MSA
124072667 5270 Rosid View MSA
123750896 5271 Pentapetalae View MSA
122789616 5272 Eudicot View MSA
121309830 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain