Gene : Carub.0005s1319 C. rubella v1.1
Defline:  (1 of 1) PTHR11468:SF4 - ALPHA-GLUCAN PHOSPHORYLASE 2, CYTOSOLIC Genomic Order:  1319
Name:  ? Carub.0005s1319 Secondary Identifier:  ? PAC:39224173
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7238 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1319 0.5kb upstream 0.5kb upstream 5591 true scaffold_5: 7414241-7419831 Capsella rubella
Carub.0005s1319 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 7419332-7419831 Capsella rubella
Carub.0005s1319 0.5kb downstream 0.5kb downstream 5591 true scaffold_5: 7413741-7419331 Capsella rubella
Carub.0005s1319 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 7413741-7414240 Capsella rubella
Carub.0005s1319 1.0kb upstream 1.0kb upstream 6091 true scaffold_5: 7414241-7420331 Capsella rubella
Carub.0005s1319 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 7419332-7420331 Capsella rubella
Carub.0005s1319 1.0kb downstream 1.0kb downstream 6091 true scaffold_5: 7413241-7419331 Capsella rubella
Carub.0005s1319 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 7413241-7414240 Capsella rubella
Carub.0005s1319 2.0kb upstream 2.0kb upstream 7091 true scaffold_5: 7414241-7421331 Capsella rubella
Carub.0005s1319 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 7419332-7421331 Capsella rubella
Carub.0005s1319 2.0kb downstream 2.0kb downstream 7091 true scaffold_5: 7412241-7419331 Capsella rubella
Carub.0005s1319 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 7412241-7414240 Capsella rubella
Carub.0005s1319 5.0kb upstream 5.0kb upstream 10091 true scaffold_5: 7414241-7424331 Capsella rubella
Carub.0005s1319 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 7419332-7424331 Capsella rubella
Carub.0005s1319 5.0kb downstream 5.0kb downstream 10091 true scaffold_5: 7409241-7419331 Capsella rubella
Carub.0005s1319 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 7409241-7414240 Capsella rubella
Carub.0005s1319 10.0kb upstream 10.0kb upstream 15091 true scaffold_5: 7414241-7429331 Capsella rubella
Carub.0005s1319 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 7419332-7429331 Capsella rubella
Carub.0005s1319 10.0kb downstream 10.0kb downstream 15091 true scaffold_5: 7404241-7419331 Capsella rubella
Carub.0005s1319 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 7404241-7414240 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366287 5261 Brassicaceae View MSA
123834640 5264 Brassicales-Malvales View MSA
124341676 5266 SBM View MSA
124237010 5268 Malvidae View MSA
124069139 5270 Rosid View MSA
123737453 5271 Pentapetalae View MSA
122789907 5272 Eudicot View MSA
122042301 5273 Angiosperm View MSA
121351120 5274 Embryophyte View MSA
123425744 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain