Gene : Carub.0005s1481 C. rubella v1.1
Defline:  (1 of 3) PTHR21596//PTHR21596:SF25 - RIBONUCLEASE P SUBUNIT P38 // TRANSCRIPTION REGULATOR-LIKE-RELATED Genomic Order:  1481
Name:  ? Carub.0005s1481 Secondary Identifier:  ? PAC:39224880
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1481 0.5kb upstream 0.5kb upstream 3866 true scaffold_5: 8059302-8063167 Capsella rubella
Carub.0005s1481 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 8059302-8059801 Capsella rubella
Carub.0005s1481 0.5kb downstream 0.5kb downstream 3866 true scaffold_5: 8059802-8063667 Capsella rubella
Carub.0005s1481 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 8063168-8063667 Capsella rubella
Carub.0005s1481 1.0kb upstream 1.0kb upstream 4366 true scaffold_5: 8058802-8063167 Capsella rubella
Carub.0005s1481 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 8058802-8059801 Capsella rubella
Carub.0005s1481 1.0kb downstream 1.0kb downstream 4366 true scaffold_5: 8059802-8064167 Capsella rubella
Carub.0005s1481 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 8063168-8064167 Capsella rubella
Carub.0005s1481 2.0kb upstream 2.0kb upstream 5366 true scaffold_5: 8057802-8063167 Capsella rubella
Carub.0005s1481 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 8057802-8059801 Capsella rubella
Carub.0005s1481 2.0kb downstream 2.0kb downstream 5366 true scaffold_5: 8059802-8065167 Capsella rubella
Carub.0005s1481 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 8063168-8065167 Capsella rubella
Carub.0005s1481 5.0kb upstream 5.0kb upstream 8366 true scaffold_5: 8054802-8063167 Capsella rubella
Carub.0005s1481 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 8054802-8059801 Capsella rubella
Carub.0005s1481 5.0kb downstream 5.0kb downstream 8366 true scaffold_5: 8059802-8068167 Capsella rubella
Carub.0005s1481 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 8063168-8068167 Capsella rubella
Carub.0005s1481 10.0kb upstream 10.0kb upstream 13366 true scaffold_5: 8049802-8063167 Capsella rubella
Carub.0005s1481 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 8049802-8059801 Capsella rubella
Carub.0005s1481 10.0kb downstream 10.0kb downstream 13366 true scaffold_5: 8059802-8073167 Capsella rubella
Carub.0005s1481 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 8063168-8073167 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362870 5261 Brassicaceae View MSA
123833550 5264 Brassicales-Malvales View MSA
124351647 5266 SBM View MSA
124243296 5268 Malvidae View MSA
124067281 5270 Rosid View MSA
123745159 5271 Pentapetalae View MSA
122793118 5272 Eudicot View MSA
122047890 5273 Angiosperm View MSA
121350157 5274 Embryophyte View MSA
123381596 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain