Gene : Carub.0005s1361 C. rubella v1.1
Defline:  (1 of 1) PTHR11540//PTHR11540:SF14 - MALATE AND LACTATE DEHYDROGENASE // MALATE DEHYDROGENASE, CHLOROPLASTIC Genomic Order:  1361
Name:  ? Carub.0005s1361 Secondary Identifier:  ? PAC:39224769
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella GLYOXYLATE-BYPASS Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella PWY-7115 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1361 0.5kb upstream 0.5kb upstream 2302 true scaffold_5: 7564771-7567072 Capsella rubella
Carub.0005s1361 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 7564771-7565270 Capsella rubella
Carub.0005s1361 0.5kb downstream 0.5kb downstream 2302 true scaffold_5: 7565271-7567572 Capsella rubella
Carub.0005s1361 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 7567073-7567572 Capsella rubella
Carub.0005s1361 1.0kb upstream 1.0kb upstream 2802 true scaffold_5: 7564271-7567072 Capsella rubella
Carub.0005s1361 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 7564271-7565270 Capsella rubella
Carub.0005s1361 1.0kb downstream 1.0kb downstream 2802 true scaffold_5: 7565271-7568072 Capsella rubella
Carub.0005s1361 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 7567073-7568072 Capsella rubella
Carub.0005s1361 2.0kb upstream 2.0kb upstream 3802 true scaffold_5: 7563271-7567072 Capsella rubella
Carub.0005s1361 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 7563271-7565270 Capsella rubella
Carub.0005s1361 2.0kb downstream 2.0kb downstream 3802 true scaffold_5: 7565271-7569072 Capsella rubella
Carub.0005s1361 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 7567073-7569072 Capsella rubella
Carub.0005s1361 5.0kb upstream 5.0kb upstream 6802 true scaffold_5: 7560271-7567072 Capsella rubella
Carub.0005s1361 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 7560271-7565270 Capsella rubella
Carub.0005s1361 5.0kb downstream 5.0kb downstream 6802 true scaffold_5: 7565271-7572072 Capsella rubella
Carub.0005s1361 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 7567073-7572072 Capsella rubella
Carub.0005s1361 10.0kb upstream 10.0kb upstream 11802 true scaffold_5: 7555271-7567072 Capsella rubella
Carub.0005s1361 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 7555271-7565270 Capsella rubella
Carub.0005s1361 10.0kb downstream 10.0kb downstream 11802 true scaffold_5: 7565271-7577072 Capsella rubella
Carub.0005s1361 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 7567073-7577072 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367755 5261 Brassicaceae View MSA
123838139 5264 Brassicales-Malvales View MSA
124343979 5266 SBM View MSA
124242231 5268 Malvidae View MSA
124067628 5270 Rosid View MSA
123748297 5271 Pentapetalae View MSA
122785823 5272 Eudicot View MSA
122049358 5273 Angiosperm View MSA
121344647 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain