Gene : Carub.0005s1363 C. rubella v1.1
Defline:  (1 of 4) PTHR23012//PTHR23012:SF57 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Genomic Order:  1363
Name:  ? Carub.0005s1363 Secondary Identifier:  ? PAC:39226654
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1363 0.5kb upstream 0.5kb upstream 3530 true scaffold_5: 7571268-7574797 Capsella rubella
Carub.0005s1363 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 7571268-7571767 Capsella rubella
Carub.0005s1363 0.5kb downstream 0.5kb downstream 3530 true scaffold_5: 7571768-7575297 Capsella rubella
Carub.0005s1363 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 7574798-7575297 Capsella rubella
Carub.0005s1363 1.0kb upstream 1.0kb upstream 4030 true scaffold_5: 7570768-7574797 Capsella rubella
Carub.0005s1363 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 7570768-7571767 Capsella rubella
Carub.0005s1363 1.0kb downstream 1.0kb downstream 4030 true scaffold_5: 7571768-7575797 Capsella rubella
Carub.0005s1363 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 7574798-7575797 Capsella rubella
Carub.0005s1363 2.0kb upstream 2.0kb upstream 5030 true scaffold_5: 7569768-7574797 Capsella rubella
Carub.0005s1363 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 7569768-7571767 Capsella rubella
Carub.0005s1363 2.0kb downstream 2.0kb downstream 5030 true scaffold_5: 7571768-7576797 Capsella rubella
Carub.0005s1363 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 7574798-7576797 Capsella rubella
Carub.0005s1363 5.0kb upstream 5.0kb upstream 8030 true scaffold_5: 7566768-7574797 Capsella rubella
Carub.0005s1363 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 7566768-7571767 Capsella rubella
Carub.0005s1363 5.0kb downstream 5.0kb downstream 8030 true scaffold_5: 7571768-7579797 Capsella rubella
Carub.0005s1363 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 7574798-7579797 Capsella rubella
Carub.0005s1363 10.0kb upstream 10.0kb upstream 13030 true scaffold_5: 7561768-7574797 Capsella rubella
Carub.0005s1363 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 7561768-7571767 Capsella rubella
Carub.0005s1363 10.0kb downstream 10.0kb downstream 13030 true scaffold_5: 7571768-7584797 Capsella rubella
Carub.0005s1363 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 7574798-7584797 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367185 5261 Brassicaceae View MSA
123839450 5264 Brassicales-Malvales View MSA
124340031 5266 SBM View MSA
124251215 5268 Malvidae View MSA
124070525 5270 Rosid View MSA
123751414 5271 Pentapetalae View MSA
122787187 5272 Eudicot View MSA
122048569 5273 Angiosperm View MSA
121311024 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain