Gene : Carub.0005s1677 C. rubella v1.1
Defline:  (1 of 1) PTHR16057//PTHR16057:SF1 - WINS1, 2 PROTEIN // PROTEIN LINES HOMOLOG Genomic Order:  1677
Name:  ? Carub.0005s1677 Secondary Identifier:  ? PAC:39223919
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1677 0.5kb upstream 0.5kb upstream 3228 true scaffold_5: 8801201-8804428 Capsella rubella
Carub.0005s1677 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 8801201-8801700 Capsella rubella
Carub.0005s1677 0.5kb downstream 0.5kb downstream 3228 true scaffold_5: 8801701-8804928 Capsella rubella
Carub.0005s1677 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 8804429-8804928 Capsella rubella
Carub.0005s1677 1.0kb upstream 1.0kb upstream 3728 true scaffold_5: 8800701-8804428 Capsella rubella
Carub.0005s1677 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 8800701-8801700 Capsella rubella
Carub.0005s1677 1.0kb downstream 1.0kb downstream 3728 true scaffold_5: 8801701-8805428 Capsella rubella
Carub.0005s1677 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 8804429-8805428 Capsella rubella
Carub.0005s1677 2.0kb upstream 2.0kb upstream 4728 true scaffold_5: 8799701-8804428 Capsella rubella
Carub.0005s1677 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 8799701-8801700 Capsella rubella
Carub.0005s1677 2.0kb downstream 2.0kb downstream 4728 true scaffold_5: 8801701-8806428 Capsella rubella
Carub.0005s1677 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 8804429-8806428 Capsella rubella
Carub.0005s1677 5.0kb upstream 5.0kb upstream 7728 true scaffold_5: 8796701-8804428 Capsella rubella
Carub.0005s1677 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 8796701-8801700 Capsella rubella
Carub.0005s1677 5.0kb downstream 5.0kb downstream 7728 true scaffold_5: 8801701-8809428 Capsella rubella
Carub.0005s1677 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 8804429-8809428 Capsella rubella
Carub.0005s1677 10.0kb upstream 10.0kb upstream 12728 true scaffold_5: 8791701-8804428 Capsella rubella
Carub.0005s1677 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 8791701-8801700 Capsella rubella
Carub.0005s1677 10.0kb downstream 10.0kb downstream 12728 true scaffold_5: 8801701-8814428 Capsella rubella
Carub.0005s1677 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 8804429-8814428 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122334608 5261 Brassicaceae Singleton cluster - no MSA
123775426 5264 Brassicales-Malvales Singleton cluster - no MSA
124273836 5266 SBM Singleton cluster - no MSA
124252744 5268 Malvidae View MSA
124050314 5270 Rosid View MSA
123738250 5271 Pentapetalae View MSA
122793539 5272 Eudicot View MSA
122042842 5273 Angiosperm View MSA
121348888 5274 Embryophyte View MSA
123381062 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain